SNP Report
Basic Infomation
| Name | rs7488343 dbSNP |
|---|---|
| Location | chr:12,49689597 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10400435 | 0.85[ASN][1000 genomes] |
| rs10400567 | 0.85[ASN][1000 genomes] |
| rs11168973 | 0.96[ASN][1000 genomes] |
| rs11168974 | 0.92[ASN][1000 genomes] |
| rs11168975 | 0.92[ASN][1000 genomes] |
| rs11835303 | 0.89[ASN][1000 genomes] |
| rs12580931 | 1.00[ASN][1000 genomes] |
| rs12822293 | 0.85[ASN][1000 genomes] |
| rs2070760 | 1.00[ASN][1000 genomes] |
| rs28493849 | 1.00[ASN][1000 genomes] |
| rs3088008 | 0.89[ASN][1000 genomes] |
| rs4243545 | 0.89[ASN][1000 genomes] |
| rs4898504 | 0.96[ASN][1000 genomes] |
| rs4898517 | 0.82[AMR][1000 genomes] |
| rs4898519 | 0.92[ASN][1000 genomes] |
| rs57241318 | 0.92[ASN][1000 genomes] |
| rs59575791 | 0.89[ASN][1000 genomes] |
| rs67309388 | 1.00[ASN][1000 genomes] |
| rs73112143 | 1.00[ASN][1000 genomes] |
| rs73309977 | 0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRPH | Proximal transcriptional regulation |
| ENSG00000258101 | Distal transcriptional regulation |
| TUBA1C | Distal transcriptional regulation |
| ENSG00000258232 | Distal transcriptional regulation |
| C1QL4 | Distal transcriptional regulation |
| PRPH | Distal transcriptional regulation |
| TROAP | Distal transcriptional regulation |
| ENSG00000258334 | Distal transcriptional regulation |
| SPATS2 | Distal transcriptional regulation |
| ENSG00000258334 | RNA binding protein mediated regulation |
| PRPH | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014