SNP Report
Basic Infomation
| Name | rs7398257 dbSNP |
|---|---|
| Location | chr:12,49711871 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 45)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875946 | 0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10875948 | 0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11168967 | 0.87[ASN][1000 genomes] |
| rs11168970 | 0.87[ASN][1000 genomes] |
| rs11168971 | 0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11168972 | 0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11835037 | 0.87[ASN][1000 genomes] |
| rs11837234 | 0.87[ASN][1000 genomes] |
| rs12301545 | 0.87[ASN][1000 genomes] |
| rs12304800 | 0.87[ASN][1000 genomes] |
| rs12315095 | 0.87[ASN][1000 genomes] |
| rs12315130 | 0.87[ASN][1000 genomes] |
| rs12317532 | 0.87[ASN][1000 genomes] |
| rs12318618 | 0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12322335 | 0.87[ASN][1000 genomes] |
| rs12322798 | 0.87[ASN][1000 genomes] |
| rs12581428 | 0.81[ASN][1000 genomes] |
| rs2070761 | 0.87[ASN][1000 genomes] |
| rs2230550 | 0.81[ASN][1000 genomes] |
| rs2236746 | 0.87[ASN][1000 genomes] |
| rs28543370 | 0.87[ASN][1000 genomes] |
| rs28798494 | 0.87[ASN][1000 genomes] |
| rs28823960 | 0.87[ASN][1000 genomes] |
| rs28857010 | 0.87[ASN][1000 genomes] |
| rs34791911 | 0.87[ASN][1000 genomes] |
| rs3898446 | 0.87[ASN][1000 genomes] |
| rs4898504 | 0.96[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs4898516 | 0.87[ASN][1000 genomes] |
| rs4898517 | 0.87[ASN][1000 genomes] |
| rs56911877 | 0.81[EUR][1000 genomes] |
| rs57451017 | 0.87[ASN][1000 genomes] |
| rs57755392 | 0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs59990555 | 0.81[EUR][1000 genomes] |
| rs60174686 | 0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs61023481 | 0.87[ASN][1000 genomes] |
| rs61649357 | 0.86[EUR][1000 genomes] |
| rs7136538 | 0.87[ASN][1000 genomes] |
| rs7136945 | 0.87[ASN][1000 genomes] |
| rs7294873 | 0.87[ASN][1000 genomes] |
| rs7295247 | 0.87[ASN][1000 genomes] |
| rs73309973 | 0.85[EUR][1000 genomes] |
| rs7342318 | 0.87[ASN][1000 genomes] |
| rs7342370 | 0.87[ASN][1000 genomes] |
| rs7397166 | 0.86[EUR][1000 genomes] |
| rs7398252 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000258101 | Distal transcriptional regulation |
| TUBA1C | Distal transcriptional regulation |
| TROAP | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014