SNP Report

Basic Infomation

Name	rs60808917 dbSNP
Location	chr:12,49926216
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 49)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10160947	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10161131	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10875955	0.82[AMR][1000 genomes]
rs11169015	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11169016	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11169017	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11169027	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11169048	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169049	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169058	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169059	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11611743	0.83[EUR][1000 genomes]
rs12296440	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12299282	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12300817	1.00[ASN][1000 genomes]
rs12301632	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12305716	1.00[ASN][1000 genomes]
rs12306118	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12306212	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12306645	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12309053	1.00[ASN][1000 genomes]
rs12314428	1.00[ASN][1000 genomes]
rs12315996	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12316170	1.00[ASN][1000 genomes]
rs12318633	1.00[ASN][1000 genomes]
rs12320284	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12322561	1.00[ASN][1000 genomes]
rs12322571	1.00[ASN][1000 genomes]
rs2272478	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57200170	1.00[ASN][1000 genomes]
rs57601151	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58125498	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6580709	0.82[EUR][1000 genomes]
rs7132684	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7139061	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7294648	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7294973	1.00[ASN][1000 genomes]
rs73297209	0.83[EUR][1000 genomes]
rs73301240	1.00[ASN][1000 genomes]
rs73301259	1.00[ASN][1000 genomes]
rs7955541	0.82[EUR][1000 genomes]
rs7962951	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7969010	0.83[EUR][1000 genomes]
rs7969099	0.83[EUR][1000 genomes]
rs7975712	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7976165	1.00[ASN][1000 genomes]
rs9919739	0.83[ASN][1000 genomes]
rs9919740	0.83[ASN][1000 genomes]
rs9919807	0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
KCNH3	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)