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rVarBase
SNP Report
Basic Infomation
Name
rs4898506  
dbSNP
Location
chr:12,49847570
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10783314
0.85[YRI][hapmap]
rs11169005
0.85[YRI][hapmap]
rs11169008
0.85[YRI][hapmap]
rs11169048
0.85[YRI][hapmap]
rs11169058
0.85[YRI][hapmap]
rs11169063
0.80[YRI][hapmap]
rs12296440
0.85[YRI][hapmap]
rs7295556
0.85[YRI][hapmap]
rs7974420
0.81[YRI][hapmap]
rs7975712
0.81[YRI][hapmap]
rSNP related genes
Symbol
Regulation type
SPATS2
Distal transcriptional regulation
SPATS2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)