SNP Report
Basic Infomation
| Name | rs11169063 dbSNP |
|---|---|
| Location | chr:12,49931585 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 111)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10783314 | 0.95[YRI][hapmap] |
| rs10875955 | 0.83[EUR][1000 genomes] |
| rs11168981 | 0.85[LWK][hapmap] |
| rs11169005 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.85[LWK][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap];0.95[YRI][hapmap] |
| rs11169008 | 1.00[CHB][hapmap];0.95[YRI][hapmap] |
| rs11169016 | 0.83[ASW][hapmap];0.81[GIH][hapmap];0.83[TSI][hapmap] |
| rs11169043 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11169045 | 0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11169048 | 0.94[ASW][hapmap];0.97[GIH][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap] |
| rs11169058 | 0.94[ASW][hapmap];0.91[CEU][hapmap];0.94[GIH][hapmap];0.83[MKK][hapmap];0.90[TSI][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs11169059 | 0.94[ASW][hapmap];0.88[CEU][hapmap];0.93[GIH][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs11169065 | 1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs11169069 | 0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs11169070 | 0.81[ASN][1000 genomes] |
| rs11169073 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs11169076 | 0.86[ASN][1000 genomes] |
| rs11169080 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs11169081 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs11169082 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs11169092 | 0.85[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs11169097 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs11169101 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs11169104 | 1.00[CHD][hapmap];0.85[JPT][hapmap] |
| rs11169106 | 1.00[CHD][hapmap];0.85[JPT][hapmap] |
| rs1150057 | 1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs11615710 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11833411 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs11834380 | 1.00[CHD][hapmap];0.85[JPT][hapmap] |
| rs12296440 | 0.88[ASW][hapmap];0.91[CEU][hapmap];0.94[GIH][hapmap];0.83[MKK][hapmap];0.90[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs12299505 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs12299513 | 0.81[ASN][1000 genomes] |
| rs12301632 | 0.83[ASW][hapmap];0.94[GIH][hapmap];0.86[TSI][hapmap] |
| rs12303310 | 0.85[JPT][hapmap] |
| rs12306118 | 0.83[ASW][hapmap];0.81[GIH][hapmap];0.83[TSI][hapmap] |
| rs12310510 | 0.85[JPT][hapmap] |
| rs12311527 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12311839 | 0.84[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs12314878 | 0.86[ASN][1000 genomes] |
| rs12315996 | 0.83[ASW][hapmap];0.94[GIH][hapmap];0.83[TSI][hapmap] |
| rs12320556 | 0.86[ASN][1000 genomes] |
| rs12321819 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs13066 | 0.86[ASN][1000 genomes] |
| rs13906 | 0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1574326 | 0.86[CHD][hapmap];0.85[JPT][hapmap] |
| rs17123808 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1902329 | 1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1902330 | 0.82[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2005195 | 0.86[ASN][1000 genomes] |
| rs2241418 | 0.86[ASN][1000 genomes] |
| rs2272478 | 0.83[ASW][hapmap];0.94[GIH][hapmap];0.86[TSI][hapmap] |
| rs2278068 | 1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2278069 | 0.93[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2278070 | 0.84[ASN][1000 genomes] |
| rs2303305 | 0.93[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs2336058 | 0.86[CHD][hapmap];0.85[JPT][hapmap] |
| rs2878532 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs35275181 | 0.85[CHD][hapmap] |
| rs3815832 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs3887727 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs3887728 | 0.93[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs4045193 | 0.81[ASN][1000 genomes] |
| rs4073998 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs4133070 | 1.00[CHD][hapmap];0.85[JPT][hapmap] |
| rs4584654 | 0.86[CHD][hapmap];0.85[JPT][hapmap] |
| rs4898506 | 0.80[YRI][hapmap] |
| rs4993294 | 0.86[CHD][hapmap] |
| rs52824916 | 0.84[ASN][1000 genomes] |
| rs55686423 | 0.84[ASN][1000 genomes] |
| rs55853522 | 0.86[ASN][1000 genomes] |
| rs57916875 | 0.84[ASN][1000 genomes] |
| rs57965817 | 0.97[ASN][1000 genomes] |
| rs58125498 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs59940006 | 0.86[ASN][1000 genomes] |
| rs61512987 | 0.92[ASN][1000 genomes] |
| rs61616163 | 0.82[ASN][1000 genomes] |
| rs6580707 | 0.83[ASW][hapmap];0.94[GIH][hapmap];0.83[TSI][hapmap] |
| rs6580709 | 0.83[ASW][hapmap];0.94[GIH][hapmap];0.86[TSI][hapmap] |
| rs6580715 | 0.80[EUR][1000 genomes] |
| rs7131915 | 0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs7132792 | 0.93[CHD][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7133398 | 0.94[ASW][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];0.94[MEX][hapmap];0.80[TSI][hapmap];0.80[YRI][hapmap] |
| rs7137976 | 0.86[CHD][hapmap];0.85[JPT][hapmap] |
| rs7294648 | 0.83[ASW][hapmap];0.94[GIH][hapmap];0.90[TSI][hapmap] |
| rs7295556 | 0.94[ASW][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.90[TSI][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7296281 | 0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs7299609 | 1.00[CHB][hapmap];0.85[JPT][hapmap] |
| rs7301209 | 0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs73305008 | 0.86[ASN][1000 genomes] |
| rs73305012 | 0.86[ASN][1000 genomes] |
| rs7952734 | 1.00[CHD][hapmap];0.85[JPT][hapmap] |
| rs7952938 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7953911 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs7954994 | 1.00[CHD][hapmap];0.85[JPT][hapmap] |
| rs7955541 | 0.83[ASW][hapmap];0.94[GIH][hapmap];0.86[TSI][hapmap] |
| rs7956181 | 1.00[CHD][hapmap];0.85[JPT][hapmap] |
| rs7962863 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs7962951 | 0.83[ASW][hapmap];0.81[GIH][hapmap];0.83[TSI][hapmap] |
| rs7963954 | 1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.82[ASN][1000 genomes] |
| rs7965658 | 1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7969099 | 0.83[ASW][hapmap];0.93[GIH][hapmap];0.86[TSI][hapmap] |
| rs7970241 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs7973389 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs7974420 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.88[LWK][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.90[YRI][hapmap] |
| rs7975599 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs7975712 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.94[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7977389 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs7979285 | 0.86[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs7980731 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap] |
| rs8626 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs876889 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs933738 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KCNH3 | Proximal transcriptional regulation |
| ENSG00000258101 | Distal transcriptional regulation |
| TUBA1C | Distal transcriptional regulation |
| SPATS2 | Distal transcriptional regulation |
| MCRS1 | Distal transcriptional regulation |
| PRPF40B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014