SNP Report

Basic Infomation

Name	rs2878532 dbSNP
Location	chr:12,50051619
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 127)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1049986	0.85[JPT][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes]
rs10875964	0.89[AMR][1000 genomes]
rs10875968	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11169063	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11169065	1.00[JPT][hapmap]
rs11169069	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs11169073	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs11169076	0.84[ASN][1000 genomes]
rs11169080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11169081	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs11169082	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs11169092	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs11169097	0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11169101	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11169104	0.85[JPT][hapmap];0.89[AMR][1000 genomes]
rs11169106	0.85[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes]
rs11169109	0.85[AMR][1000 genomes]
rs11169111	0.81[AMR][1000 genomes]
rs11169112	0.81[AMR][1000 genomes]
rs11169113	0.81[AMR][1000 genomes]
rs11169118	0.85[AMR][1000 genomes]
rs11169125	0.85[AMR][1000 genomes]
rs11169127	0.83[AMR][1000 genomes]
rs11169133	0.85[AMR][1000 genomes]
rs11169140	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1150057	1.00[JPT][hapmap]
rs11833411	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs11834380	0.85[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes]
rs12296586	0.85[AMR][1000 genomes]
rs12299505	0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12299513	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12301824	0.80[ASN][1000 genomes]
rs12303310	0.85[JPT][hapmap];0.85[AMR][1000 genomes]
rs12304796	0.81[AMR][1000 genomes]
rs12305460	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12308256	0.81[AMR][1000 genomes]
rs12310510	0.85[JPT][hapmap];0.89[AMR][1000 genomes]
rs12311839	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs12314795	0.85[AMR][1000 genomes]
rs12314878	0.84[ASN][1000 genomes]
rs12315224	0.85[AMR][1000 genomes]
rs12316284	0.85[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes]
rs12320556	0.84[ASN][1000 genomes]
rs12321169	0.85[AMR][1000 genomes]
rs12321819	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs13066	0.84[ASN][1000 genomes]
rs13906	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1470906	0.85[JPT][hapmap];0.85[AMR][1000 genomes]
rs1574326	0.85[JPT][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes]
rs17123808	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs17123981	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs1902329	1.00[JPT][hapmap]
rs1902330	0.82[JPT][hapmap]
rs2005195	0.84[ASN][1000 genomes]
rs2241418	0.84[ASN][1000 genomes]
rs2278068	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2278069	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2278070	0.81[ASN][1000 genomes]
rs2303305	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2336058	0.85[JPT][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes]
rs3815832	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs3887727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3887728	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs4045193	0.89[ASN][1000 genomes]
rs4073998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4133070	0.85[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes]
rs4563	0.85[JPT][hapmap];0.85[AMR][1000 genomes]
rs4584654	0.85[JPT][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes]
rs52824916	0.81[ASN][1000 genomes]
rs55686423	0.82[ASN][1000 genomes]
rs55812050	0.85[AMR][1000 genomes]
rs55853522	0.84[ASN][1000 genomes]
rs57342147	0.83[AMR][1000 genomes]
rs57463238	0.81[AMR][1000 genomes]
rs57916875	0.81[ASN][1000 genomes]
rs57965817	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58278271	0.87[ASN][1000 genomes]
rs58446833	0.83[AMR][1000 genomes]
rs59233136	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59849800	0.83[AMR][1000 genomes]
rs59940006	0.84[ASN][1000 genomes]
rs60402517	0.87[AMR][1000 genomes]
rs61512987	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61616163	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61620972	0.81[AMR][1000 genomes]
rs7131915	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7132792	0.85[JPT][hapmap]
rs7136052	0.85[AMR][1000 genomes]
rs7137976	0.85[JPT][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes]
rs7296281	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7299002	0.81[AMR][1000 genomes]
rs7299609	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7301209	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7306877	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7309607	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7312658	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73305008	0.84[ASN][1000 genomes]
rs73305012	0.84[ASN][1000 genomes]
rs73305085	0.85[AMR][1000 genomes]
rs73306808	0.89[AMR][1000 genomes]
rs73309030	0.81[AMR][1000 genomes]
rs7688	0.85[JPT][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes]
rs7952734	0.85[JPT][hapmap];0.83[AMR][1000 genomes]
rs7952938	0.92[ASN][1000 genomes]
rs7953911	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7954994	0.85[JPT][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes]
rs7955586	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7956089	0.85[AMR][1000 genomes]
rs7956181	0.85[JPT][hapmap];0.85[AMR][1000 genomes]
rs7962645	0.85[AMR][1000 genomes]
rs7962863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7963954	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7965658	0.84[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7967624	0.81[AMR][1000 genomes]
rs7970241	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7973389	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7975599	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7975712	1.00[CHB][hapmap]
rs7977389	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7979262	0.89[AMR][1000 genomes]
rs7979285	1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7980979	0.85[AMR][1000 genomes]
rs8626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876889	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs897056	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9804749	0.83[AMR][1000 genomes]
rs9804971	0.85[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
FMNL3	Distal transcriptional regulation
TMBIM6	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)