SNP Report
Basic Infomation
| Name | rs3887727 dbSNP |
|---|---|
| Location | chr:12,49972425 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 106)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1049986 | 0.86[CHD][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap] |
| rs10875968 | 0.91[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[EUR][1000 genomes] |
| rs11169005 | 1.00[CHB][hapmap] |
| rs11169008 | 1.00[CHB][hapmap] |
| rs11169043 | 0.81[ASN][1000 genomes] |
| rs11169045 | 0.81[ASN][1000 genomes] |
| rs11169063 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs11169065 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs11169069 | 0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11169070 | 0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11169073 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11169076 | 0.87[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11169080 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169081 | 0.83[ASW][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11169082 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11169092 | 0.85[JPT][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11169097 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap];0.84[ASN][1000 genomes] |
| rs11169101 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11169104 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap] |
| rs11169106 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap] |
| rs11169140 | 0.91[CEU][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.83[EUR][1000 genomes] |
| rs1150057 | 1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs11615710 | 0.81[ASN][1000 genomes] |
| rs11833411 | 0.83[ASW][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11834380 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap] |
| rs12299505 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.84[ASN][1000 genomes] |
| rs12299513 | 0.84[ASN][1000 genomes] |
| rs12303310 | 0.85[JPT][hapmap] |
| rs12310510 | 0.85[JPT][hapmap] |
| rs12311527 | 0.84[ASN][1000 genomes] |
| rs12311839 | 0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12314878 | 0.89[ASN][1000 genomes] |
| rs12316284 | 0.85[JPT][hapmap];0.85[MEX][hapmap] |
| rs12320556 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12321819 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.89[ASN][1000 genomes] |
| rs12322561 | 0.88[GIH][hapmap] |
| rs13066 | 0.87[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs13906 | 0.85[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs1470906 | 0.85[JPT][hapmap] |
| rs1574326 | 0.86[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap] |
| rs17123808 | 0.83[ASW][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17123981 | 0.91[CEU][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.85[YRI][hapmap] |
| rs1902329 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs1902330 | 0.82[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs2005195 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2241418 | 0.89[ASN][1000 genomes] |
| rs2278068 | 1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs2278069 | 0.93[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.89[ASN][1000 genomes] |
| rs2278070 | 0.87[ASN][1000 genomes] |
| rs2303305 | 0.93[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs2336058 | 0.86[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap] |
| rs2878532 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs35275181 | 0.85[CHD][hapmap] |
| rs3815832 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.89[ASN][1000 genomes] |
| rs3887728 | 0.93[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4045193 | 0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4073998 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4133070 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap] |
| rs4563 | 0.85[JPT][hapmap] |
| rs4584654 | 0.86[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap] |
| rs4993294 | 0.86[CHD][hapmap] |
| rs52824916 | 0.87[ASN][1000 genomes] |
| rs55686423 | 0.87[ASN][1000 genomes] |
| rs55853522 | 0.89[ASN][1000 genomes] |
| rs57916875 | 0.87[ASN][1000 genomes] |
| rs57965817 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58125498 | 0.81[ASN][1000 genomes] |
| rs58278271 | 0.81[ASN][1000 genomes] |
| rs59233136 | 0.83[EUR][1000 genomes] |
| rs59940006 | 0.87[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs61512987 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs61616163 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7131915 | 0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7132792 | 0.93[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs7133398 | 1.00[CHB][hapmap];0.86[CHD][hapmap] |
| rs7137976 | 0.86[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap] |
| rs7295556 | 0.86[CHD][hapmap];0.81[ASN][1000 genomes] |
| rs7296281 | 0.85[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7299609 | 0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap] |
| rs7301209 | 0.85[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs7306877 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7309607 | 0.83[EUR][1000 genomes] |
| rs7312658 | 0.83[EUR][1000 genomes] |
| rs73305008 | 0.87[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs73305012 | 0.87[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7688 | 0.86[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap] |
| rs7952734 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap] |
| rs7952938 | 0.97[ASN][1000 genomes] |
| rs7953911 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.89[ASN][1000 genomes] |
| rs7954994 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap] |
| rs7955586 | 0.88[CEU][hapmap];0.93[YRI][hapmap];0.81[EUR][1000 genomes] |
| rs7956181 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap] |
| rs7962863 | 0.82[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7963954 | 1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs7965658 | 0.83[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs7970241 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.89[ASN][1000 genomes] |
| rs7973389 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7975599 | 0.88[ASW][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.80[YRI][hapmap];0.89[ASN][1000 genomes] |
| rs7975712 | 1.00[CHB][hapmap];0.85[CHD][hapmap];0.81[ASN][1000 genomes] |
| rs7977389 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7979285 | 1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7980731 | 1.00[CHB][hapmap] |
| rs8626 | 0.88[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs876889 | 1.00[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs897056 | 0.82[EUR][1000 genomes] |
| rs933738 | 0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRPF40B | Proximal transcriptional regulation |
| ENSG00000257964 | Proximal transcriptional regulation |
| PRPF40B | Distal transcriptional regulation |
| MCRS1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014