SNP Report
Basic Infomation
| Name | rs2278070 dbSNP |
|---|---|
| Location | chr:12,49943840 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 98)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875964 | 0.80[ASN][1000 genomes] |
| rs11169063 | 0.84[ASN][1000 genomes] |
| rs11169065 | 0.88[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11169069 | 0.97[ASN][1000 genomes] |
| rs11169070 | 0.92[ASN][1000 genomes] |
| rs11169073 | 0.97[ASN][1000 genomes] |
| rs11169076 | 0.97[ASN][1000 genomes] |
| rs11169080 | 0.87[ASN][1000 genomes] |
| rs11169081 | 0.97[ASN][1000 genomes] |
| rs11169082 | 0.97[ASN][1000 genomes] |
| rs11169092 | 0.91[ASN][1000 genomes] |
| rs11169097 | 0.91[ASN][1000 genomes] |
| rs11169104 | 0.80[ASN][1000 genomes] |
| rs11169106 | 0.80[ASN][1000 genomes] |
| rs11169109 | 0.80[ASN][1000 genomes] |
| rs11169111 | 0.80[ASN][1000 genomes] |
| rs11169112 | 0.80[ASN][1000 genomes] |
| rs11169118 | 0.80[ASN][1000 genomes] |
| rs11169133 | 0.80[ASN][1000 genomes] |
| rs11833411 | 0.91[ASN][1000 genomes] |
| rs11834380 | 0.80[ASN][1000 genomes] |
| rs12296586 | 0.80[ASN][1000 genomes] |
| rs12299505 | 0.91[ASN][1000 genomes] |
| rs12299513 | 0.91[ASN][1000 genomes] |
| rs12303310 | 0.80[ASN][1000 genomes] |
| rs12310510 | 0.80[ASN][1000 genomes] |
| rs12311527 | 0.91[ASN][1000 genomes] |
| rs12311839 | 0.97[ASN][1000 genomes] |
| rs12314795 | 0.80[ASN][1000 genomes] |
| rs12314878 | 0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12315224 | 0.80[ASN][1000 genomes] |
| rs12320556 | 0.97[ASN][1000 genomes] |
| rs12321819 | 0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13066 | 0.97[ASN][1000 genomes] |
| rs13906 | 0.81[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1470906 | 0.80[ASN][1000 genomes] |
| rs1574326 | 0.80[ASN][1000 genomes] |
| rs17123808 | 0.97[ASN][1000 genomes] |
| rs1902329 | 0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1902330 | 0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2005195 | 0.97[ASN][1000 genomes] |
| rs2241418 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2278068 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2278069 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2303305 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2336058 | 0.80[ASN][1000 genomes] |
| rs2878532 | 0.81[ASN][1000 genomes] |
| rs3815832 | 0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3887727 | 0.87[ASN][1000 genomes] |
| rs3887728 | 0.97[ASN][1000 genomes] |
| rs4045193 | 0.91[ASN][1000 genomes] |
| rs4073998 | 0.84[ASN][1000 genomes] |
| rs4133070 | 0.80[ASN][1000 genomes] |
| rs4563 | 0.80[ASN][1000 genomes] |
| rs4584654 | 0.80[ASN][1000 genomes] |
| rs52824916 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55686423 | 0.84[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs55812050 | 0.80[ASN][1000 genomes] |
| rs55853522 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs57191490 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs57342147 | 0.80[ASN][1000 genomes] |
| rs57916875 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57965817 | 0.87[ASN][1000 genomes] |
| rs58278271 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs59940006 | 0.97[ASN][1000 genomes] |
| rs60121503 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs61512987 | 0.81[ASN][1000 genomes] |
| rs61620972 | 0.80[ASN][1000 genomes] |
| rs7131915 | 0.97[ASN][1000 genomes] |
| rs7132792 | 0.91[ASN][1000 genomes] |
| rs7136052 | 0.80[ASN][1000 genomes] |
| rs7137976 | 0.80[ASN][1000 genomes] |
| rs7296281 | 0.97[ASN][1000 genomes] |
| rs7299002 | 0.80[ASN][1000 genomes] |
| rs7301209 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73305008 | 0.97[ASN][1000 genomes] |
| rs73305012 | 0.97[ASN][1000 genomes] |
| rs73306808 | 0.80[ASN][1000 genomes] |
| rs74089182 | 0.83[ASN][1000 genomes] |
| rs7952734 | 0.80[ASN][1000 genomes] |
| rs7952938 | 0.84[ASN][1000 genomes] |
| rs7953911 | 0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7954994 | 0.80[ASN][1000 genomes] |
| rs7956089 | 0.80[ASN][1000 genomes] |
| rs7956181 | 0.80[ASN][1000 genomes] |
| rs7962645 | 0.80[ASN][1000 genomes] |
| rs7965658 | 0.94[ASN][1000 genomes] |
| rs7970241 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7973389 | 0.97[ASN][1000 genomes] |
| rs7975599 | 0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7977389 | 0.83[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7979262 | 0.80[ASN][1000 genomes] |
| rs7979285 | 0.87[ASN][1000 genomes] |
| rs7980979 | 0.80[ASN][1000 genomes] |
| rs8626 | 0.81[ASN][1000 genomes] |
| rs876889 | 0.94[ASN][1000 genomes] |
| rs933738 | 0.92[ASN][1000 genomes] |
| rs9804749 | 0.80[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPATS2 | Distal transcriptional regulation |
| KCNH3 | Distal transcriptional regulation |
| MCRS1 | Distal transcriptional regulation |
| KCNH3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014