SNP Report

Basic Infomation

Name	rs7979285 dbSNP
Location	chr:12,49986544
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 84)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10875968	0.91[CEU][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11169043	0.81[ASN][1000 genomes]
rs11169045	0.81[ASN][1000 genomes]
rs11169063	0.86[JPT][hapmap];0.97[ASN][1000 genomes]
rs11169065	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs11169069	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11169070	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11169073	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11169076	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11169080	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169081	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11169082	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11169092	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11169097	0.84[ASN][1000 genomes]
rs11169101	0.83[CEU][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11169140	0.91[CEU][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1150057	0.85[CEU][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs11615710	0.81[ASN][1000 genomes]
rs11833411	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12299505	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12299513	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12311527	0.84[ASN][1000 genomes]
rs12311839	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12314878	0.89[ASN][1000 genomes]
rs12315996	0.81[YRI][hapmap]
rs12320556	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12321819	0.89[ASN][1000 genomes]
rs13066	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13906	0.89[ASN][1000 genomes]
rs17123808	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17123981	0.91[CEU][hapmap];0.85[YRI][hapmap]
rs1902329	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1902330	0.84[ASN][1000 genomes]
rs2005195	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2241418	0.89[ASN][1000 genomes]
rs2272478	0.81[YRI][hapmap]
rs2278068	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2278069	0.89[ASN][1000 genomes]
rs2278070	0.87[ASN][1000 genomes]
rs2303305	0.87[ASN][1000 genomes]
rs2878532	1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3815832	0.89[ASN][1000 genomes]
rs3887727	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3887728	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4045193	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4073998	1.00[CEU][hapmap];0.84[JPT][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs52824916	0.87[ASN][1000 genomes]
rs55686423	0.87[ASN][1000 genomes]
rs55853522	0.89[ASN][1000 genomes]
rs57916875	0.87[ASN][1000 genomes]
rs57965817	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58125498	0.81[ASN][1000 genomes]
rs58278271	0.81[ASN][1000 genomes]
rs59233136	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59940006	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61512987	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61616163	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7131915	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7132792	0.84[ASN][1000 genomes]
rs7294648	0.81[YRI][hapmap]
rs7295556	0.81[ASN][1000 genomes]
rs7296281	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7299609	0.91[CEU][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes]
rs7301209	0.89[ASN][1000 genomes]
rs7306877	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7309607	0.82[EUR][1000 genomes]
rs7312658	0.82[EUR][1000 genomes]
rs73305008	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73305012	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7952938	0.97[ASN][1000 genomes]
rs7953911	0.89[ASN][1000 genomes]
rs7955586	0.88[CEU][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes]
rs7962863	0.91[CEU][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7963954	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs7965658	0.85[CEU][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs7970241	0.89[ASN][1000 genomes]
rs7973389	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7975599	0.89[ASN][1000 genomes]
rs7975712	0.81[ASN][1000 genomes]
rs7977389	0.89[ASN][1000 genomes]
rs8626	0.91[CEU][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs876889	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs897056	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs933738	0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000199237	Proximal transcriptional regulation
ENSG00000257243	Proximal transcriptional regulation
POLR2KP1	Proximal transcriptional regulation
ENSG00000257243	Distal transcriptional regulation
MCRS1	Distal transcriptional regulation
PRPF40B	Distal transcriptional regulation
PRPF40B	RNA binding protein mediated regulation
FAM186B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)