SNP Report

Basic Infomation

Name	rs17123981 dbSNP
Location	chr:12,50165690
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 63)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10219602	1.00[CHB][hapmap]
rs1049986	1.00[CHB][hapmap];0.84[MEX][hapmap];0.81[AMR][1000 genomes]
rs1078216	1.00[CHB][hapmap]
rs10875968	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11169069	1.00[CHB][hapmap]
rs11169073	1.00[CHB][hapmap]
rs11169080	0.91[CEU][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.85[YRI][hapmap]
rs11169081	1.00[CHB][hapmap]
rs11169082	1.00[CHB][hapmap]
rs11169092	1.00[CHB][hapmap]
rs11169097	1.00[CHB][hapmap];0.85[MEX][hapmap]
rs11169101	0.91[CEU][hapmap];0.93[YRI][hapmap]
rs11169104	1.00[CHB][hapmap];0.85[MEX][hapmap]
rs11169106	1.00[CHB][hapmap];0.85[MEX][hapmap]
rs11169128	1.00[CHB][hapmap]
rs11169130	1.00[CHB][hapmap]
rs11169140	1.00[CEU][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11833411	1.00[CHB][hapmap]
rs11834380	1.00[CHB][hapmap];0.93[MEX][hapmap]
rs12299505	1.00[CHB][hapmap]
rs12303310	1.00[CHB][hapmap]
rs12306114	1.00[CHB][hapmap]
rs12308256	0.81[AMR][1000 genomes]
rs12310510	1.00[CHB][hapmap]
rs12314795	1.00[CHB][hapmap]
rs12316284	1.00[CHB][hapmap];0.85[MEX][hapmap];0.81[AMR][1000 genomes]
rs1470906	1.00[CHB][hapmap]
rs1574326	1.00[CHB][hapmap];0.85[MEX][hapmap]
rs17123808	1.00[CHB][hapmap]
rs2336058	1.00[CHB][hapmap];0.85[MEX][hapmap]
rs2878532	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs35275181	1.00[CHB][hapmap]
rs3887727	0.91[CEU][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.85[YRI][hapmap]
rs3887728	1.00[CHB][hapmap]
rs4073998	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs4133070	1.00[CHB][hapmap];0.85[MEX][hapmap]
rs4563	1.00[CHB][hapmap]
rs4584654	1.00[CHB][hapmap];0.85[MEX][hapmap]
rs57463238	0.81[AMR][1000 genomes]
rs59233136	0.87[AMR][1000 genomes]
rs7131915	1.00[CHB][hapmap]
rs7136772	1.00[CHB][hapmap]
rs7137976	1.00[CHB][hapmap];0.85[MEX][hapmap]
rs7299609	0.82[ASW][hapmap];1.00[CEU][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.89[YRI][hapmap]
rs7309607	0.83[AMR][1000 genomes]
rs7312658	0.83[AMR][1000 genomes]
rs73309030	0.81[AMR][1000 genomes]
rs7688	1.00[CHB][hapmap];0.85[MEX][hapmap];0.81[AMR][1000 genomes]
rs7952734	1.00[CHB][hapmap];0.85[MEX][hapmap]
rs7954994	1.00[CHB][hapmap];0.85[MEX][hapmap]
rs7955586	1.00[CEU][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes]
rs7956089	1.00[CHB][hapmap]
rs7956181	1.00[CHB][hapmap];0.85[MEX][hapmap]
rs7962863	0.88[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];0.81[LWK][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.93[YRI][hapmap]
rs7963954	0.84[CEU][hapmap]
rs7965658	1.00[CHB][hapmap]
rs7967624	0.81[AMR][1000 genomes]
rs7973389	1.00[CHB][hapmap]
rs7977389	1.00[CHB][hapmap]
rs7979285	0.91[CEU][hapmap];0.85[YRI][hapmap]
rs8626	0.82[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];0.96[TSI][hapmap];0.93[YRI][hapmap]
rs876889	1.00[CHB][hapmap]
rs897056	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
TMBIM6	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)