SNP Report

Basic Infomation

Name	rs11169128 dbSNP
Location	chr:12,50124039
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 84)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10160960	0.83[ASN][1000 genomes]
rs10161088	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10219602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1049986	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs1078216	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10875968	1.00[CHB][hapmap]
rs11169065	1.00[CHB][hapmap]
rs11169069	1.00[CHB][hapmap]
rs11169073	1.00[CHB][hapmap]
rs11169081	1.00[CHB][hapmap]
rs11169082	1.00[CHB][hapmap]
rs11169092	1.00[CHB][hapmap]
rs11169097	1.00[CHB][hapmap]
rs11169104	1.00[CHB][hapmap]
rs11169106	1.00[CHB][hapmap]
rs11169108	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169121	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169130	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169132	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11503899	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11833411	1.00[CHB][hapmap]
rs11834380	1.00[CHB][hapmap]
rs12299505	1.00[CHB][hapmap]
rs12303310	1.00[CHB][hapmap]
rs12304910	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12306114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12306565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12308567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12309717	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12310510	1.00[CHB][hapmap]
rs12311839	1.00[CHB][hapmap]
rs12314676	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12314795	1.00[CHB][hapmap]
rs12315732	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12316284	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs12321819	1.00[CHB][hapmap]
rs12321910	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12321935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13906	1.00[CHB][hapmap]
rs1470906	1.00[CHB][hapmap]
rs1574326	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs17123808	1.00[CHB][hapmap]
rs17123981	1.00[CHB][hapmap]
rs1902329	1.00[CHB][hapmap]
rs1902330	1.00[CHB][hapmap]
rs2278068	1.00[CHB][hapmap]
rs2278069	1.00[CHB][hapmap]
rs2303305	1.00[CHB][hapmap]
rs2336058	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs28654319	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28755804	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35275181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3815832	1.00[CHB][hapmap]
rs3887728	1.00[CHB][hapmap]
rs4133070	1.00[CHB][hapmap]
rs4563	1.00[CHB][hapmap]
rs4584654	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs56784440	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57144906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58250762	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60402517	0.85[ASN][1000 genomes]
rs7131915	1.00[CHB][hapmap]
rs7136772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7136990	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7137976	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs7296281	1.00[CHB][hapmap]
rs7301209	1.00[CHB][hapmap]
rs73306854	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73306885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309015	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs7952734	1.00[CHB][hapmap]
rs7953911	1.00[CHB][hapmap]
rs7954994	1.00[CHB][hapmap]
rs7956089	1.00[CHB][hapmap]
rs7956181	1.00[CHB][hapmap]
rs7963954	0.85[CHD][hapmap]
rs7965658	1.00[CHB][hapmap]
rs7970241	1.00[CHB][hapmap]
rs7973389	1.00[CHB][hapmap]
rs7975599	1.00[CHB][hapmap]
rs7977389	1.00[CHB][hapmap]
rs876889	1.00[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
FMNL3	Distal transcriptional regulation
TMBIM6	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)