SNP Report
Basic Infomation
| Name | rs73306885 dbSNP |
|---|---|
| Location | chr:12,50135548 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10160960 | 0.83[ASN][1000 genomes] |
| rs10161088 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10219602 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1078216 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169108 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169121 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169128 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169129 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169130 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169132 | 0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11503899 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12304910 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12306114 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12306565 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12308567 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12309717 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12314676 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12315732 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12321910 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12321935 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28654319 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28755804 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35275181 | 0.82[ASN][1000 genomes] |
| rs56784440 | 0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs57144906 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58250762 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60402517 | 0.85[ASN][1000 genomes] |
| rs7136772 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7136990 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73306854 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73309015 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMBIM6 | Proximal transcriptional regulation |
| RERE | Distal transcriptional regulation |
| RNU1-1 | Distal transcriptional regulation |
| C1orf63 | Distal transcriptional regulation |
| SFN | Distal transcriptional regulation |
| MRPS15 | Distal transcriptional regulation |
| ENSG00000223745 | Distal transcriptional regulation |
| DR1 | Distal transcriptional regulation |
| ENSG00000234222 | Distal transcriptional regulation |
| RBM8A | Distal transcriptional regulation |
| HIST2H2AC | Distal transcriptional regulation |
| S100A11 | Distal transcriptional regulation |
| TBCE | Distal transcriptional regulation |
| HPS5 | Distal transcriptional regulation |
| GTF2H1 | Distal transcriptional regulation |
| ARID4A | Distal transcriptional regulation |
| SNTB2 | Distal transcriptional regulation |
| SNORD60 | Distal transcriptional regulation |
| ENSG00000260260 | Distal transcriptional regulation |
| TRAF7 | Distal transcriptional regulation |
| FUS | Distal transcriptional regulation |
| C17orf76-AS1 | Distal transcriptional regulation |
| BRIP1 | Distal transcriptional regulation |
| ENSG00000267288 | Distal transcriptional regulation |
| SLC25A11 | Distal transcriptional regulation |
| RNF167 | Distal transcriptional regulation |
| FSTL3 | Distal transcriptional regulation |
| ZFP36 | Distal transcriptional regulation |
| ZNF274 | Distal transcriptional regulation |
| LINC00085 | Distal transcriptional regulation |
| MSL3P1 | Distal transcriptional regulation |
| PRKRA | Distal transcriptional regulation |
| SRSF6 | Distal transcriptional regulation |
| SDC4 | Distal transcriptional regulation |
| SPECC1L | Distal transcriptional regulation |
| ENSG00000258555 | Distal transcriptional regulation |
| ENSG00000245322 | Distal transcriptional regulation |
| H2AFZ | Distal transcriptional regulation |
| RUFY1 | Distal transcriptional regulation |
| CSNK1G3 | Distal transcriptional regulation |
| ENSG00000261071 | Distal transcriptional regulation |
| NOL7 | Distal transcriptional regulation |
| PNISR | Distal transcriptional regulation |
| EEF1A1 | Distal transcriptional regulation |
| HCG18 | Distal transcriptional regulation |
| TRIM39 | Distal transcriptional regulation |
| IFRD1 | Distal transcriptional regulation |
| TNFRSF10B | Distal transcriptional regulation |
| NDRG1 | Distal transcriptional regulation |
| FUBP3 | Distal transcriptional regulation |
| ENSG00000237461 | Distal transcriptional regulation |
| TUBA1C | Distal transcriptional regulation |
| FAM19A2 | Distal transcriptional regulation |
| SNRNP35 | Distal transcriptional regulation |
| CLASP2 | Distal transcriptional regulation |
| TUBA1B | Distal transcriptional regulation |
| ENSG00000258017 | Distal transcriptional regulation |
| ENSG00000258101 | Distal transcriptional regulation |
| MCRS1 | Distal transcriptional regulation |
| PRPF40B | Distal transcriptional regulation |
| FMNL3 | Distal transcriptional regulation |
| TMBIM6 | Distal transcriptional regulation |
| ENSG00000257570 | Distal transcriptional regulation |
| NCKAP5L | Distal transcriptional regulation |
| BCDIN3D-AS1 | Distal transcriptional regulation |
| LSM6P2 | Distal transcriptional regulation |
| BCDIN3D | Distal transcriptional regulation |
| COX14 | Distal transcriptional regulation |
| SMARCD1 | Distal transcriptional regulation |
| NCOA3 | Distal transcriptional regulation |
| SPATS2 | Distal transcriptional regulation |
| TMBIM6 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014