SNP Report
Basic Infomation
| Name | rs12315732 dbSNP |
|---|---|
| Location | chr:12,50143637 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10161088 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10219602 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1078216 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11169108 | 0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11169121 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11169128 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11169129 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11169130 | 1.00[CEU][hapmap];0.84[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11169132 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11169140 | 1.00[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs11503899 | 1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12304910 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12306114 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12306565 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12308567 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12309717 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12314676 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12321910 | 0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12321935 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2278068 | 1.00[CHB][hapmap] |
| rs28654319 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28755804 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35275181 | 1.00[CEU][hapmap] |
| rs56784440 | 0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs57144906 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58250762 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7136772 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7136990 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73306854 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73306885 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73309015 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMBIM6 | Proximal transcriptional regulation |
| PRPF40B | Distal transcriptional regulation |
| FMNL3 | Distal transcriptional regulation |
| TMBIM6 | Distal transcriptional regulation |
| BCDIN3D | Distal transcriptional regulation |
| TMBIM6 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014