SNP Report
Basic Infomation
| Name | rs1078216 dbSNP |
|---|---|
| Location | chr:12,50137998 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 84)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10160960 | 0.83[ASN][1000 genomes] |
| rs10161088 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10219602 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1049986 | 1.00[CHB][hapmap];0.92[CHD][hapmap] |
| rs10875968 | 1.00[CHB][hapmap] |
| rs11169065 | 1.00[CHB][hapmap] |
| rs11169069 | 1.00[CHB][hapmap] |
| rs11169073 | 1.00[CHB][hapmap] |
| rs11169081 | 1.00[CHB][hapmap] |
| rs11169082 | 1.00[CHB][hapmap] |
| rs11169092 | 1.00[CHB][hapmap] |
| rs11169097 | 1.00[CHB][hapmap] |
| rs11169104 | 1.00[CHB][hapmap] |
| rs11169106 | 1.00[CHB][hapmap] |
| rs11169108 | 0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169121 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169128 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169129 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169130 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.83[TSI][hapmap];0.84[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11169132 | 0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11503899 | 1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11833411 | 1.00[CHB][hapmap] |
| rs11834380 | 1.00[CHB][hapmap] |
| rs12299505 | 1.00[CHB][hapmap] |
| rs12303310 | 1.00[CHB][hapmap] |
| rs12304910 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12306114 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12306565 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12308567 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12309717 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12310510 | 1.00[CHB][hapmap] |
| rs12311839 | 1.00[CHB][hapmap] |
| rs12314676 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12314795 | 1.00[CHB][hapmap] |
| rs12315732 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12316284 | 1.00[CHB][hapmap];0.85[CHD][hapmap] |
| rs12321819 | 1.00[CHB][hapmap] |
| rs12321910 | 0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12321935 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13906 | 1.00[CHB][hapmap] |
| rs1470906 | 1.00[CHB][hapmap] |
| rs1574326 | 1.00[CHB][hapmap];0.92[CHD][hapmap] |
| rs17123808 | 1.00[CHB][hapmap] |
| rs17123981 | 1.00[CHB][hapmap] |
| rs1902329 | 1.00[CHB][hapmap] |
| rs1902330 | 1.00[CHB][hapmap] |
| rs2278068 | 1.00[CHB][hapmap] |
| rs2278069 | 1.00[CHB][hapmap] |
| rs2303305 | 1.00[CHB][hapmap] |
| rs2336058 | 1.00[CHB][hapmap];0.92[CHD][hapmap] |
| rs28654319 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28755804 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35275181 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs3815832 | 1.00[CHB][hapmap] |
| rs3887728 | 1.00[CHB][hapmap] |
| rs4133070 | 1.00[CHB][hapmap] |
| rs4563 | 1.00[CHB][hapmap] |
| rs4584654 | 1.00[CHB][hapmap];0.92[CHD][hapmap] |
| rs56784440 | 0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs57144906 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58250762 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60402517 | 0.85[ASN][1000 genomes] |
| rs7131915 | 1.00[CHB][hapmap] |
| rs7136772 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7136990 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7137976 | 1.00[CHB][hapmap];0.92[CHD][hapmap] |
| rs7296281 | 1.00[CHB][hapmap] |
| rs7301209 | 1.00[CHB][hapmap] |
| rs73306854 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73306885 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73309015 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7688 | 1.00[CHB][hapmap];0.92[CHD][hapmap] |
| rs7952734 | 1.00[CHB][hapmap] |
| rs7953911 | 1.00[CHB][hapmap] |
| rs7954994 | 1.00[CHB][hapmap] |
| rs7956089 | 1.00[CHB][hapmap] |
| rs7956181 | 1.00[CHB][hapmap] |
| rs7963954 | 0.85[CHD][hapmap] |
| rs7965658 | 1.00[CHB][hapmap] |
| rs7970241 | 1.00[CHB][hapmap] |
| rs7973389 | 1.00[CHB][hapmap] |
| rs7975599 | 1.00[CHB][hapmap] |
| rs7977389 | 1.00[CHB][hapmap] |
| rs876889 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRPF40B | Distal transcriptional regulation |
| FMNL3 | Distal transcriptional regulation |
| NCKAP5L | Distal transcriptional regulation |
| BCDIN3D-AS1 | Distal transcriptional regulation |
| TMBIM6 | Distal transcriptional regulation |
| ENSG00000257570 | Distal transcriptional regulation |
| BCDIN3D | Distal transcriptional regulation |
| TMBIM6 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014