SNP Report

Basic Infomation

Name	rs61616163 dbSNP
Location	chr:12,50083100
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 82)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1049986	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10875964	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10875968	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11169063	0.82[ASN][1000 genomes]
rs11169080	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11169097	0.89[AMR][1000 genomes]
rs11169101	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169104	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11169106	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11169109	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11169111	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11169112	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11169113	0.81[AMR][1000 genomes]
rs11169118	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11169125	0.85[AMR][1000 genomes]
rs11169127	0.83[AMR][1000 genomes]
rs11169133	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11169140	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11834380	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12296586	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12299505	0.83[AMR][1000 genomes]
rs12299513	0.83[AMR][1000 genomes]
rs12301824	0.90[ASN][1000 genomes]
rs12303310	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12304796	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12305460	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12308256	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12310510	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12314795	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12315224	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12316284	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12321169	0.85[AMR][1000 genomes]
rs1470906	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1574326	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2336058	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2878532	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3887727	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4073998	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4133070	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4563	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4584654	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55812050	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57191490	0.87[ASN][1000 genomes]
rs57342147	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57463238	0.81[AMR][1000 genomes]
rs57965817	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58446833	0.83[AMR][1000 genomes]
rs59233136	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59849800	0.83[AMR][1000 genomes]
rs60121503	0.87[ASN][1000 genomes]
rs60402517	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61512987	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61620972	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7136052	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7137976	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7299002	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7299609	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7306877	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7309607	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7312658	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73305085	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73306808	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73309030	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs74089182	0.87[ASN][1000 genomes]
rs7688	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7952734	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7952938	0.82[ASN][1000 genomes]
rs7954994	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7955586	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7956089	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7956181	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7962645	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7962863	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963954	1.00[ASN][1000 genomes]
rs7967624	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7979262	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7979285	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7980979	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8626	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs897056	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9804749	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9804971	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
TMBIM6	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)