SNP Report
Basic Infomation
| Name | rs12305460 dbSNP |
|---|---|
| Location | chr:12,50120610 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 71)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1049986 | 0.84[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10875964 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10875968 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11169097 | 0.84[AMR][1000 genomes] |
| rs11169101 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11169104 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11169106 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11169109 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11169111 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11169112 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11169113 | 0.88[AMR][1000 genomes] |
| rs11169118 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11169125 | 0.88[AMR][1000 genomes] |
| rs11169127 | 0.86[AMR][1000 genomes] |
| rs11169133 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11169140 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11834380 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12296586 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12301824 | 0.80[AMR][1000 genomes] |
| rs12303310 | 0.84[ASN][1000 genomes] |
| rs12304796 | 0.84[AMR][1000 genomes] |
| rs12308256 | 0.84[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12310510 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12314795 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12315224 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12316284 | 0.84[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12321169 | 0.88[AMR][1000 genomes] |
| rs1470906 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1574326 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2336058 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2878532 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4073998 | 0.80[AMR][1000 genomes] |
| rs4133070 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4563 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4584654 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs55812050 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs57191490 | 0.81[ASN][1000 genomes] |
| rs57342147 | 0.86[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs57463238 | 0.84[AMR][1000 genomes] |
| rs58446833 | 0.86[AMR][1000 genomes] |
| rs59233136 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs59849800 | 0.86[AMR][1000 genomes] |
| rs60121503 | 0.81[ASN][1000 genomes] |
| rs60402517 | 0.91[AMR][1000 genomes] |
| rs61512987 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs61616163 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs61620972 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7136052 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7137976 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7299002 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7309607 | 0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7312658 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs73305085 | 0.82[ASN][1000 genomes] |
| rs73306808 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs73309030 | 0.84[AMR][1000 genomes] |
| rs74089182 | 0.81[ASN][1000 genomes] |
| rs7688 | 0.84[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7952734 | 0.84[ASN][1000 genomes] |
| rs7954994 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7955586 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7956089 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7956181 | 0.84[ASN][1000 genomes] |
| rs7962645 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7962863 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7967624 | 0.84[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7979262 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7980979 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs8626 | 0.87[EUR][1000 genomes] |
| rs897056 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9804749 | 0.86[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9804971 | 0.88[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMBIM6 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014