SNP Report
Basic Infomation
| Name | rs58095611 dbSNP |
|---|---|
| Location | chr:12,49799600 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 51)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10160947 | 0.82[EUR][1000 genomes] |
| rs10161131 | 0.82[EUR][1000 genomes] |
| rs11168988 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11168999 | 1.00[ASN][1000 genomes] |
| rs11169015 | 0.81[EUR][1000 genomes] |
| rs11169016 | 0.81[EUR][1000 genomes] |
| rs11169017 | 0.80[EUR][1000 genomes] |
| rs11169023 | 1.00[ASN][1000 genomes] |
| rs11169027 | 0.82[EUR][1000 genomes] |
| rs11169078 | 1.00[ASN][1000 genomes] |
| rs11611743 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12299282 | 0.81[EUR][1000 genomes] |
| rs12299908 | 1.00[ASN][1000 genomes] |
| rs12301632 | 0.82[EUR][1000 genomes] |
| rs12305457 | 1.00[ASN][1000 genomes] |
| rs12306118 | 0.81[EUR][1000 genomes] |
| rs12306194 | 1.00[ASN][1000 genomes] |
| rs12306212 | 0.81[EUR][1000 genomes] |
| rs12306645 | 0.81[EUR][1000 genomes] |
| rs12306785 | 1.00[ASN][1000 genomes] |
| rs12310836 | 1.00[ASN][1000 genomes] |
| rs12315996 | 0.82[EUR][1000 genomes] |
| rs12317050 | 1.00[ASN][1000 genomes] |
| rs12320273 | 1.00[ASN][1000 genomes] |
| rs12320284 | 0.81[EUR][1000 genomes] |
| rs12322425 | 1.00[ASN][1000 genomes] |
| rs2272478 | 0.82[EUR][1000 genomes] |
| rs56014465 | 1.00[ASN][1000 genomes] |
| rs56140046 | 1.00[ASN][1000 genomes] |
| rs57601151 | 0.82[EUR][1000 genomes] |
| rs61733848 | 1.00[ASN][1000 genomes] |
| rs6580707 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6580709 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6580711 | 0.80[AMR][1000 genomes] |
| rs7132684 | 0.80[EUR][1000 genomes] |
| rs7132759 | 1.00[ASN][1000 genomes] |
| rs7139061 | 0.82[EUR][1000 genomes] |
| rs7294648 | 0.82[EUR][1000 genomes] |
| rs7299820 | 1.00[ASN][1000 genomes] |
| rs7314265 | 1.00[ASN][1000 genomes] |
| rs73297209 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs73305039 | 1.00[ASN][1000 genomes] |
| rs73305072 | 1.00[ASN][1000 genomes] |
| rs73305076 | 1.00[ASN][1000 genomes] |
| rs74089562 | 1.00[ASN][1000 genomes] |
| rs7955541 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7962951 | 0.81[EUR][1000 genomes] |
| rs7963130 | 1.00[ASN][1000 genomes] |
| rs7969010 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7969099 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7970334 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPATS2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014