SNP Report
Basic Infomation
| Name | rs11168404 dbSNP |
|---|---|
| Location | chr:12,48486715 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 67)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10492081 | 0.81[ASW][hapmap];0.81[CHB][hapmap];0.85[YRI][hapmap] |
| rs1049392 | 0.93[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10747529 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs10875733 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes] |
| rs10875739 | 0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs10875741 | 0.89[ASN][1000 genomes] |
| rs10875744 | 0.86[ASN][1000 genomes] |
| rs10875752 | 0.93[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap];0.85[EUR][1000 genomes] |
| rs10875754 | 1.00[JPT][hapmap] |
| rs10875761 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap] |
| rs10875766 | 1.00[JPT][hapmap] |
| rs11168350 | 0.94[JPT][hapmap] |
| rs11168353 | 1.00[GIH][hapmap];1.00[JPT][hapmap] |
| rs11168354 | 1.00[JPT][hapmap] |
| rs11168358 | 1.00[JPT][hapmap] |
| rs11168363 | 0.81[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap] |
| rs11168364 | 0.81[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap] |
| rs11168373 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[EUR][1000 genomes] |
| rs11168378 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11168412 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11168417 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11168419 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11168424 | 0.87[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11168434 | 1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
| rs11168435 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs11168438 | 1.00[JPT][hapmap] |
| rs11168445 | 0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs11168448 | 0.90[CEU][hapmap];0.88[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap] |
| rs11168453 | 0.90[CEU][hapmap];0.89[CHB][hapmap];0.81[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap] |
| rs11168454 | 0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs11832455 | 0.89[ASN][1000 genomes] |
| rs11834818 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12228924 | 0.90[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12422355 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12423250 | 0.94[JPT][hapmap] |
| rs12425679 | 0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12426981 | 0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17122567 | 0.92[GIH][hapmap];1.00[JPT][hapmap] |
| rs1859443 | 0.94[JPT][hapmap] |
| rs1978161 | 1.00[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs2107640 | 0.90[ASN][1000 genomes] |
| rs2158515 | 0.86[ASN][1000 genomes] |
| rs2286020 | 0.93[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2408954 | 1.00[JPT][hapmap] |
| rs3742075 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3825403 | 0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs4258439 | 0.95[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs56129148 | 0.92[ASN][1000 genomes] |
| rs57430775 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs58540891 | 0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs58556309 | 0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6580658 | 0.80[JPT][hapmap] |
| rs7138917 | 0.82[ASN][1000 genomes] |
| rs7299704 | 0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs7302354 | 1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7303677 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7304428 | 0.89[ASN][1000 genomes] |
| rs73104071 | 0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7484942 | 0.83[CEU][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap] |
| rs765260 | 0.81[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs7962390 | 0.90[CEU][hapmap];0.89[CHB][hapmap];0.81[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap] |
| rs7962569 | 0.81[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap] |
| rs8181670 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap] |
| rs886589 | 0.81[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs954326 | 0.94[JPT][hapmap] |
| rs9651981 | 0.96[GIH][hapmap];0.94[JPT][hapmap] |
| rs9804751 | 0.96[GIH][hapmap];0.94[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PFKM | Distal transcriptional regulation |
| ASB8 | Distal transcriptional regulation |
| SENP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014