SNP Report

Basic Infomation

Name	rs11168350 dbSNP
Location	chr:12,48402628
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 53)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1049392	0.94[JPT][hapmap]
rs10747529	0.94[JPT][hapmap]
rs10875733	0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs10875739	0.94[JPT][hapmap]
rs10875752	0.94[JPT][hapmap]
rs10875754	0.94[JPT][hapmap]
rs10875761	0.94[JPT][hapmap]
rs10875766	0.94[JPT][hapmap]
rs11168353	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs11168354	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11168358	0.90[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs11168361	0.88[ASN][1000 genomes]
rs11168363	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs11168364	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs11168373	0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs11168404	0.94[JPT][hapmap]
rs11168417	0.94[JPT][hapmap]
rs11168424	0.93[JPT][hapmap]
rs11168434	0.94[JPT][hapmap]
rs11168435	0.94[JPT][hapmap]
rs11168438	0.91[JPT][hapmap]
rs11168445	0.94[JPT][hapmap]
rs11168448	0.94[JPT][hapmap]
rs11168453	0.94[JPT][hapmap]
rs11168454	0.94[JPT][hapmap]
rs12422355	0.94[JPT][hapmap]
rs12423250	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1635527	0.93[YRI][hapmap]
rs17122567	0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs1793958	0.83[JPT][hapmap]
rs1793960	0.88[CHB][hapmap]
rs1859442	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1859443	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2056448	0.84[ASN][1000 genomes]
rs2286020	0.94[JPT][hapmap]
rs2408954	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs3742075	0.87[JPT][hapmap]
rs3825403	0.94[JPT][hapmap]
rs4258439	0.94[JPT][hapmap]
rs58086963	0.96[ASN][1000 genomes]
rs7299704	0.94[JPT][hapmap]
rs7302354	0.94[JPT][hapmap]
rs7303677	0.94[JPT][hapmap]
rs7484942	0.94[JPT][hapmap]
rs765260	0.94[JPT][hapmap]
rs7962390	0.94[JPT][hapmap]
rs7962569	0.87[JPT][hapmap]
rs8181670	0.94[JPT][hapmap]
rs886589	0.94[JPT][hapmap]
rs954326	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9651981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9669263	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9804751	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
COL2A1	Proximal transcriptional regulation
ENSG00000257985	Proximal transcriptional regulation
COL2A1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)