SNP Report

Basic Infomation

Name	rs17122567 dbSNP
Location	chr:12,48413875
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 57)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10450783	0.89[EUR][1000 genomes]
rs1049392	0.92[GIH][hapmap];1.00[JPT][hapmap]
rs10747529	1.00[JPT][hapmap]
rs10875733	0.92[GIH][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10875739	1.00[JPT][hapmap]
rs10875752	0.92[GIH][hapmap];1.00[JPT][hapmap]
rs10875754	1.00[JPT][hapmap]
rs10875761	0.88[GIH][hapmap];1.00[JPT][hapmap]
rs10875766	1.00[JPT][hapmap]
rs11168350	0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs11168353	0.90[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11168354	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11168358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168360	0.91[EUR][1000 genomes]
rs11168361	0.88[ASN][1000 genomes]
rs11168363	0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11168364	0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11168373	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11168404	0.92[GIH][hapmap];1.00[JPT][hapmap]
rs11168417	0.92[GIH][hapmap];1.00[JPT][hapmap]
rs11168424	0.92[GIH][hapmap];1.00[JPT][hapmap]
rs11168434	1.00[JPT][hapmap]
rs11168435	0.88[GIH][hapmap];1.00[JPT][hapmap]
rs11168438	1.00[JPT][hapmap]
rs11168445	1.00[JPT][hapmap]
rs11168448	0.88[GIH][hapmap];1.00[JPT][hapmap]
rs11168453	0.88[GIH][hapmap];1.00[JPT][hapmap]
rs11168454	1.00[JPT][hapmap]
rs12228924	0.87[GIH][hapmap]
rs12422355	1.00[JPT][hapmap]
rs12423250	0.90[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap]
rs1859442	0.96[ASN][1000 genomes]
rs1859443	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1978161	0.82[JPT][hapmap]
rs2056448	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2286020	0.92[GIH][hapmap];1.00[JPT][hapmap]
rs2408954	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3742075	0.93[JPT][hapmap]
rs3825403	1.00[JPT][hapmap]
rs4258439	1.00[JPT][hapmap]
rs58086963	0.96[ASN][1000 genomes]
rs6580658	0.80[JPT][hapmap]
rs7134203	0.91[CEU][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs7134878	0.95[CEU][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs7135261	0.82[YRI][hapmap]
rs7299704	1.00[JPT][hapmap]
rs7302354	1.00[JPT][hapmap]
rs7303677	0.92[GIH][hapmap];1.00[JPT][hapmap]
rs7484942	0.88[GIH][hapmap];1.00[JPT][hapmap]
rs765260	1.00[JPT][hapmap]
rs7962390	0.88[GIH][hapmap];1.00[JPT][hapmap]
rs7962569	0.88[GIH][hapmap];0.94[JPT][hapmap]
rs8181670	0.88[GIH][hapmap];1.00[JPT][hapmap]
rs886589	1.00[JPT][hapmap]
rs954326	0.90[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap]
rs9651981	0.90[CHB][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs9804751	0.90[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
COL2A1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
PRKAB1	SCAN
TMEM106C	SCAN
DDN	SCAN