SNP Report

Basic Infomation

Name	rs6580658 dbSNP
Location	chr:12,48582232
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 64)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1049392	0.89[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes]
rs10747529	0.81[JPT][hapmap]
rs10875733	0.80[JPT][hapmap]
rs10875739	0.80[JPT][hapmap]
rs10875752	0.88[CHB][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10875754	0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs10875757	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10875759	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10875761	0.89[CHB][hapmap];0.80[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10875765	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10875766	0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs11168353	0.80[JPT][hapmap]
rs11168354	0.82[JPT][hapmap]
rs11168358	0.82[JPT][hapmap]
rs11168363	0.80[JPT][hapmap]
rs11168364	0.80[JPT][hapmap]
rs11168373	0.81[JPT][hapmap]
rs11168404	0.80[JPT][hapmap]
rs11168417	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs11168424	0.89[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes]
rs11168434	0.89[CHB][hapmap];0.82[JPT][hapmap];0.97[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11168435	0.88[CHB][hapmap];0.80[JPT][hapmap];0.97[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11168438	0.89[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs11168439	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11168442	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168443	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168444	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168445	0.80[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168446	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168447	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168448	0.88[CHB][hapmap];0.80[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168453	0.89[CHB][hapmap];0.80[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168454	0.89[CHB][hapmap];0.81[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12422355	0.82[JPT][hapmap]
rs12425679	0.86[AMR][1000 genomes]
rs17122567	0.80[JPT][hapmap]
rs2171643	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2286020	0.89[CHB][hapmap];0.80[JPT][hapmap];0.86[AMR][1000 genomes]
rs2408954	0.82[JPT][hapmap]
rs3825403	0.80[JPT][hapmap]
rs4258439	0.81[JPT][hapmap]
rs56097189	0.96[ASN][1000 genomes]
rs57430775	0.83[AMR][1000 genomes]
rs58540891	0.86[AMR][1000 genomes]
rs58556309	0.86[AMR][1000 genomes]
rs59537300	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66507954	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7132898	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7133274	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7136243	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7136782	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7136788	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7299704	0.80[JPT][hapmap]
rs7302354	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs7303677	0.80[JPT][hapmap]
rs73104071	0.86[AMR][1000 genomes]
rs73105950	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73304926	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7484942	0.90[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs765260	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs7962390	0.89[CHB][hapmap];0.80[JPT][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7962569	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8181670	0.89[CHB][hapmap];0.80[JPT][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs886589	0.81[CHB][hapmap];0.80[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
C12orf68	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)