SNP Report

Basic Infomation

Name	rs2171643 dbSNP
Location	chr:12,48594345
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 49)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1074175	0.83[AMR][1000 genomes]
rs10783235	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10875752	0.87[ASN][1000 genomes]
rs10875754	0.86[ASN][1000 genomes]
rs10875757	0.90[ASN][1000 genomes]
rs10875759	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10875761	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10875765	0.98[ASN][1000 genomes]
rs10875766	0.92[ASN][1000 genomes]
rs10875797	0.81[AMR][1000 genomes]
rs11168434	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11168435	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11168438	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11168439	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11168442	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11168443	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11168444	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11168445	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11168446	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11168447	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11168448	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11168453	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11168454	0.99[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11168458	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11168513	0.83[AMR][1000 genomes]
rs11168515	0.83[AMR][1000 genomes]
rs11168541	0.87[AMR][1000 genomes]
rs12822431	0.83[AMR][1000 genomes]
rs12831063	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1387261	0.88[AMR][1000 genomes]
rs2291483	0.81[AMR][1000 genomes]
rs28379955	0.88[AMR][1000 genomes]
rs34417262	0.87[AMR][1000 genomes]
rs35267282	0.81[AMR][1000 genomes]
rs56097189	0.94[ASN][1000 genomes]
rs59537300	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6580658	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs66507954	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7132898	0.89[ASN][1000 genomes]
rs7133274	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7136243	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7136782	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7136788	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73105950	0.99[ASN][1000 genomes]
rs73304926	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7484942	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7962390	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7962569	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8181670	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000269514	Proximal transcriptional regulation
ENSG00000269514	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)