SNP Report
Basic Infomation
| Name | rs11168541 dbSNP |
|---|---|
| Location | chr:12,48758032 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10783235 | 1.00[JPT][hapmap] |
| rs10783248 | 0.82[ASN][1000 genomes] |
| rs10875797 | 0.84[ASN][1000 genomes] |
| rs10875798 | 1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs11168458 | 1.00[JPT][hapmap] |
| rs11168532 | 0.84[ASN][1000 genomes] |
| rs11168535 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12146726 | 0.89[ASN][1000 genomes] |
| rs12426877 | 1.00[JPT][hapmap] |
| rs12822431 | 1.00[JPT][hapmap] |
| rs12831063 | 1.00[JPT][hapmap] |
| rs1906717 | 0.84[JPT][hapmap] |
| rs2171643 | 0.87[AMR][1000 genomes] |
| rs2261608 | 1.00[JPT][hapmap] |
| rs2291483 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs2634683 | 0.82[ASN][1000 genomes] |
| rs2634685 | 0.84[JPT][hapmap] |
| rs2732458 | 0.84[JPT][hapmap] |
| rs2732467 | 0.81[ASN][1000 genomes] |
| rs34157519 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs34417262 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35139757 | 0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs35267282 | 0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3752820 | 1.00[JPT][hapmap] |
| rs7301176 | 0.91[JPT][hapmap] |
| rs7974811 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000269282 | Proximal transcriptional regulation |
| ENSG00000257792 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014