SNP Report
Basic Infomation
| Name | rs3752820 dbSNP |
|---|---|
| Location | chr:12,48728490 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1074175 | 0.88[ASN][1000 genomes] |
| rs10783235 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs10783248 | 0.90[ASN][1000 genomes] |
| rs10875766 | 0.83[CEU][hapmap] |
| rs10875797 | 0.91[ASN][1000 genomes] |
| rs10875798 | 0.89[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs11168438 | 0.81[JPT][hapmap] |
| rs11168458 | 0.88[CHB][hapmap];1.00[JPT][hapmap] |
| rs11168513 | 0.88[ASN][1000 genomes] |
| rs11168515 | 0.87[ASN][1000 genomes] |
| rs11168532 | 0.91[ASN][1000 genomes] |
| rs11168535 | 0.83[ASN][1000 genomes] |
| rs11168541 | 1.00[JPT][hapmap] |
| rs12822431 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs12831063 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1387261 | 0.87[ASN][1000 genomes] |
| rs1906717 | 0.86[JPT][hapmap] |
| rs2261608 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2291483 | 1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs2634683 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2634685 | 0.86[JPT][hapmap] |
| rs2732458 | 0.86[JPT][hapmap] |
| rs2732467 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs28379955 | 0.84[ASN][1000 genomes] |
| rs34157519 | 0.85[ASN][1000 genomes] |
| rs35267282 | 0.91[ASN][1000 genomes] |
| rs7301176 | 0.86[JPT][hapmap] |
| rs7974811 | 0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000258273 | Proximal transcriptional regulation |
| ZNF641 | Distal transcriptional regulation |
| ENSG00000257735 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014