SNP Report
Basic Infomation
| Name | rs10783235 dbSNP |
|---|---|
| Location | chr:12,48597507 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1074175 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10783248 | 0.82[ASN][1000 genomes] |
| rs10875761 | 0.89[MEX][hapmap];0.89[MKK][hapmap] |
| rs10875797 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10875798 | 0.81[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.80[ASN][1000 genomes] |
| rs11168435 | 0.89[MEX][hapmap];0.90[MKK][hapmap] |
| rs11168438 | 0.81[JPT][hapmap] |
| rs11168445 | 0.89[YRI][hapmap] |
| rs11168453 | 0.89[MEX][hapmap];0.95[MKK][hapmap];0.85[YRI][hapmap] |
| rs11168454 | 0.85[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs11168458 | 0.87[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11168513 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11168515 | 0.90[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11168532 | 0.86[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11168535 | 0.86[AMR][1000 genomes] |
| rs11168541 | 1.00[JPT][hapmap] |
| rs12822431 | 0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12831063 | 0.93[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1387261 | 0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1906717 | 0.85[JPT][hapmap] |
| rs2171643 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs2261608 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs2291483 | 0.89[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2634685 | 0.85[JPT][hapmap] |
| rs2732458 | 0.85[JPT][hapmap] |
| rs28379955 | 0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs34157519 | 0.86[AMR][1000 genomes] |
| rs35267282 | 0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3752820 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs7301176 | 0.85[JPT][hapmap] |
| rs7484942 | 0.82[MKK][hapmap] |
| rs7962390 | 0.89[MEX][hapmap];0.81[MKK][hapmap] |
| rs7962569 | 0.92[MKK][hapmap] |
| rs7974811 | 0.83[ASN][1000 genomes] |
| rs8181670 | 0.89[MEX][hapmap];0.90[MKK][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OR10AD1 | Proximal transcriptional regulation |
| ENSG00000257955 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014