SNP Report
Basic Infomation
| Name | rs7962569 dbSNP |
|---|---|
| Location | chr:12,48577013 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 74)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1049392 | 0.89[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes] |
| rs10747529 | 0.94[JPT][hapmap] |
| rs10783235 | 0.92[MKK][hapmap] |
| rs10875733 | 0.96[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap] |
| rs10875739 | 0.94[JPT][hapmap] |
| rs10875752 | 0.81[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10875754 | 0.94[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs10875757 | 0.92[ASN][1000 genomes] |
| rs10875759 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10875761 | 1.00[ASW][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[LWK][hapmap];0.89[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10875765 | 0.98[ASN][1000 genomes] |
| rs10875766 | 0.94[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs11168350 | 0.87[JPT][hapmap] |
| rs11168353 | 0.96[GIH][hapmap];0.94[JPT][hapmap] |
| rs11168354 | 0.94[JPT][hapmap] |
| rs11168358 | 0.94[JPT][hapmap] |
| rs11168363 | 0.96[GIH][hapmap];0.94[JPT][hapmap] |
| rs11168364 | 0.96[GIH][hapmap];0.94[JPT][hapmap] |
| rs11168373 | 0.93[JPT][hapmap] |
| rs11168404 | 0.81[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap] |
| rs11168417 | 0.89[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap] |
| rs11168424 | 0.89[CHB][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes] |
| rs11168434 | 0.89[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11168435 | 1.00[ASW][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[LWK][hapmap];0.89[MEX][hapmap];0.98[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11168438 | 0.91[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11168439 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11168442 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11168443 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11168444 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11168445 | 0.81[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11168446 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11168447 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11168448 | 0.81[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11168453 | 1.00[ASW][hapmap];0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.89[MEX][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11168454 | 0.90[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12228924 | 0.91[GIH][hapmap] |
| rs12422355 | 0.94[JPT][hapmap] |
| rs12423250 | 0.87[JPT][hapmap] |
| rs12425679 | 0.88[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs17122567 | 0.88[GIH][hapmap];0.94[JPT][hapmap] |
| rs1859443 | 0.87[JPT][hapmap] |
| rs1978161 | 0.88[JPT][hapmap] |
| rs2171643 | 0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2286020 | 0.89[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2408954 | 0.94[JPT][hapmap] |
| rs3742075 | 0.86[JPT][hapmap] |
| rs3825403 | 0.94[JPT][hapmap] |
| rs4258439 | 0.94[JPT][hapmap] |
| rs56097189 | 0.96[ASN][1000 genomes] |
| rs57430775 | 0.86[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs58540891 | 0.88[AMR][1000 genomes] |
| rs58556309 | 0.88[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs59537300 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6580658 | 0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs66507954 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7132898 | 0.84[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7133274 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7136243 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7136782 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7136788 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7299704 | 0.94[JPT][hapmap] |
| rs7302354 | 0.89[CHB][hapmap];0.94[JPT][hapmap] |
| rs7303677 | 0.96[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap] |
| rs73104071 | 0.88[AMR][1000 genomes] |
| rs73105950 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs73304926 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7484942 | 1.00[ASW][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs765260 | 0.94[JPT][hapmap] |
| rs7962390 | 1.00[ASW][hapmap];0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];0.89[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8181670 | 1.00[ASW][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[LWK][hapmap];0.89[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs886589 | 0.94[JPT][hapmap] |
| rs954326 | 0.87[JPT][hapmap] |
| rs9651981 | 0.91[GIH][hapmap];0.87[JPT][hapmap] |
| rs9804751 | 0.92[GIH][hapmap];0.87[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C12orf68 | Proximal transcriptional regulation |
| ASB8 | Proximal transcriptional regulation |
| ASB8 | Distal transcriptional regulation |
| ENSG00000269514 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014