SNP Report

Basic Infomation

Name	rs11168353 dbSNP
Location	chr:12,48408212
Allele	C/G/T

LD-proxy of rSNPs(r²>0.8) (count: 55)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1049392	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs10747529	1.00[JPT][hapmap]
rs10875733	1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10875739	1.00[JPT][hapmap]
rs10875752	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs10875754	1.00[JPT][hapmap]
rs10875761	0.96[GIH][hapmap];1.00[JPT][hapmap]
rs10875766	1.00[JPT][hapmap]
rs11168350	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs11168354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168358	0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11168361	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11168363	0.90[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11168364	1.00[ASW][hapmap];0.90[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];0.83[TSI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11168373	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11168404	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs11168417	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs11168424	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs11168434	1.00[JPT][hapmap]
rs11168435	0.96[GIH][hapmap];1.00[JPT][hapmap]
rs11168438	1.00[JPT][hapmap]
rs11168445	1.00[JPT][hapmap]
rs11168448	0.96[GIH][hapmap];1.00[JPT][hapmap]
rs11168453	0.96[GIH][hapmap];1.00[JPT][hapmap]
rs11168454	1.00[JPT][hapmap]
rs12228924	0.95[GIH][hapmap]
rs12422355	1.00[JPT][hapmap]
rs12423250	1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap]
rs17122567	0.90[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1793960	0.89[CHB][hapmap]
rs1859442	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1859443	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1978161	0.82[JPT][hapmap]
rs2056448	0.85[ASN][1000 genomes]
rs2286020	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs2408954	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3742075	0.93[JPT][hapmap]
rs3825403	1.00[JPT][hapmap]
rs4258439	1.00[JPT][hapmap]
rs58086963	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6580658	0.80[JPT][hapmap]
rs7135261	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs7299704	1.00[JPT][hapmap]
rs7302354	1.00[JPT][hapmap]
rs7303677	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs7484942	0.96[GIH][hapmap];1.00[JPT][hapmap]
rs765260	1.00[JPT][hapmap]
rs7962390	0.96[GIH][hapmap];1.00[JPT][hapmap]
rs7962569	0.96[GIH][hapmap];0.94[JPT][hapmap]
rs8181670	0.96[GIH][hapmap];1.00[JPT][hapmap]
rs886589	1.00[JPT][hapmap]
rs954326	1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap]
rs9651981	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9669263	0.82[ASN][1000 genomes]
rs9804751	1.00[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000258203	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
TMEM106C	SCAN
MAP2	SCAN
PSIP1	SCAN