SNP Report
Basic Infomation
| Name | rs7135261 dbSNP |
|---|---|
| Location | chr:12,48417562 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10450783 | 0.93[ASN][1000 genomes] |
| rs11168353 | 0.89[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs11168354 | 0.89[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs11168358 | 0.80[YRI][hapmap] |
| rs11168360 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11168361 | 0.80[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11168363 | 0.87[EUR][1000 genomes] |
| rs11168364 | 0.88[EUR][1000 genomes] |
| rs1635527 | 1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs17122567 | 0.82[YRI][hapmap] |
| rs1793958 | 0.86[CHB][hapmap];0.82[JPT][hapmap] |
| rs1859442 | 0.93[EUR][1000 genomes] |
| rs58086963 | 0.98[EUR][1000 genomes] |
| rs7134203 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs7134878 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs9651981 | 0.89[CEU][hapmap];0.95[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000257955 | Distal transcriptional regulation |
| ASB8 | Distal transcriptional regulation |
| HDAC7 | Distal transcriptional regulation |
| COL2A1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014