SNP Report
Basic Infomation
| Name | rs58086963 dbSNP |
|---|---|
| Location | chr:12,48411787 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875733 | 0.80[ASN][1000 genomes] |
| rs11168350 | 0.96[ASN][1000 genomes] |
| rs11168353 | 0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11168354 | 0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11168358 | 0.97[ASN][1000 genomes] |
| rs11168361 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11168363 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11168364 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11168373 | 0.80[ASN][1000 genomes] |
| rs17122567 | 0.96[ASN][1000 genomes] |
| rs1859442 | 0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1859443 | 0.81[ASN][1000 genomes] |
| rs2056448 | 0.84[ASN][1000 genomes] |
| rs2408954 | 0.85[ASN][1000 genomes] |
| rs7135261 | 0.98[EUR][1000 genomes] |
| rs9651981 | 0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9804751 | 0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Distal transcriptional regulation |
| ENSG00000257955 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014