SNP Report
Basic Infomation
| Name | rs1859442 dbSNP |
|---|---|
| Location | chr:12,48404480 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875733 | 0.80[ASN][1000 genomes] |
| rs11168350 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168353 | 0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11168354 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11168358 | 0.97[ASN][1000 genomes] |
| rs11168361 | 0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11168363 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11168364 | 0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11168373 | 0.80[ASN][1000 genomes] |
| rs17122567 | 0.96[ASN][1000 genomes] |
| rs1859443 | 0.87[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2056448 | 0.84[ASN][1000 genomes] |
| rs2408954 | 0.85[ASN][1000 genomes] |
| rs58086963 | 0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7135261 | 0.93[EUR][1000 genomes] |
| rs954326 | 0.81[ASN][1000 genomes] |
| rs9651981 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9669263 | 0.84[ASN][1000 genomes] |
| rs9804751 | 0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000257985 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014