SNP Report

Basic Infomation

Name	rs9651981 dbSNP
Location	chr:12,48404654
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 54)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1049392	0.96[GIH][hapmap];0.94[JPT][hapmap]
rs10747529	0.94[JPT][hapmap]
rs10875733	0.96[GIH][hapmap];0.94[JPT][hapmap]
rs10875739	0.94[JPT][hapmap]
rs10875752	0.96[GIH][hapmap];0.94[JPT][hapmap]
rs10875754	0.94[JPT][hapmap]
rs10875761	0.91[GIH][hapmap];0.94[JPT][hapmap]
rs10875766	0.94[JPT][hapmap]
rs11168350	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11168353	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11168354	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11168358	0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs11168361	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11168363	0.81[CEU][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11168364	0.81[CEU][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11168373	0.93[JPT][hapmap]
rs11168404	0.96[GIH][hapmap];0.94[JPT][hapmap]
rs11168417	0.96[GIH][hapmap];0.94[JPT][hapmap]
rs11168424	0.96[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap]
rs11168434	0.94[JPT][hapmap]
rs11168435	0.91[GIH][hapmap];0.94[JPT][hapmap]
rs11168438	0.91[JPT][hapmap]
rs11168445	0.93[JPT][hapmap]
rs11168448	0.91[GIH][hapmap];0.94[JPT][hapmap]
rs11168453	0.91[GIH][hapmap];0.94[JPT][hapmap]
rs11168454	0.94[JPT][hapmap]
rs12228924	0.91[GIH][hapmap];0.82[MEX][hapmap]
rs12422355	0.94[JPT][hapmap]
rs12423250	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs17122567	0.90[CHB][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs1793958	0.83[JPT][hapmap]
rs1793960	0.89[CHB][hapmap]
rs1859442	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1859443	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2056448	0.83[ASN][1000 genomes]
rs2286020	0.96[GIH][hapmap];0.94[JPT][hapmap]
rs2408954	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs3742075	0.86[JPT][hapmap]
rs3825403	0.94[JPT][hapmap]
rs4258439	0.94[JPT][hapmap]
rs58086963	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7135261	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs7299704	0.94[JPT][hapmap]
rs7302354	0.94[JPT][hapmap]
rs7303677	0.96[GIH][hapmap];0.94[JPT][hapmap]
rs7484942	0.91[GIH][hapmap];0.94[JPT][hapmap]
rs765260	0.94[JPT][hapmap]
rs7962390	0.91[GIH][hapmap];0.94[JPT][hapmap]
rs7962569	0.91[GIH][hapmap];0.87[JPT][hapmap]
rs8181670	0.91[GIH][hapmap];0.94[JPT][hapmap]
rs886589	0.94[JPT][hapmap]
rs954326	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap]
rs9669263	0.83[ASN][1000 genomes]
rs9804751	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000257985	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
PRKAB1	SCAN
TMEM106C	SCAN
C12orf41	SCAN