SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 10)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11168350	0.83[JPT][hapmap]
rs12423250	0.83[JPT][hapmap]
rs1635527	0.85[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1859443	0.83[JPT][hapmap]
rs7134203	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs7134878	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs7135261	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs954326	0.83[JPT][hapmap];0.81[LWK][hapmap]
rs9651981	0.83[JPT][hapmap]
rs9804751	0.83[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
COL2A1	Distal transcriptional regulation
COL2A1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
IRAK4	SCAN
SENP1	SCAN