SNP Report
Basic Infomation
| Name | rs12423250 dbSNP |
|---|---|
| Location | chr:12,48389245 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 45)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1049392 | 0.94[JPT][hapmap] |
| rs10747529 | 0.94[JPT][hapmap] |
| rs10875733 | 0.94[JPT][hapmap] |
| rs10875739 | 0.94[JPT][hapmap] |
| rs10875752 | 0.94[JPT][hapmap] |
| rs10875754 | 0.94[JPT][hapmap] |
| rs10875761 | 0.94[JPT][hapmap] |
| rs11168350 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11168353 | 1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap] |
| rs11168354 | 1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs11168358 | 0.90[CHB][hapmap];0.94[JPT][hapmap] |
| rs11168363 | 0.94[JPT][hapmap] |
| rs11168364 | 0.94[JPT][hapmap] |
| rs11168373 | 0.93[JPT][hapmap] |
| rs11168404 | 0.94[JPT][hapmap] |
| rs11168417 | 0.94[JPT][hapmap] |
| rs11168424 | 0.94[JPT][hapmap] |
| rs11168434 | 0.94[JPT][hapmap] |
| rs11168435 | 0.94[JPT][hapmap] |
| rs11168438 | 0.91[JPT][hapmap] |
| rs11168445 | 0.93[JPT][hapmap] |
| rs11168448 | 0.94[JPT][hapmap] |
| rs12422355 | 0.94[JPT][hapmap] |
| rs17122567 | 0.90[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap] |
| rs1793958 | 0.83[JPT][hapmap] |
| rs1793960 | 0.87[CEU][hapmap];0.89[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1859443 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2286020 | 0.94[JPT][hapmap] |
| rs2408954 | 0.94[JPT][hapmap] |
| rs3742075 | 0.86[JPT][hapmap] |
| rs3825403 | 0.94[JPT][hapmap] |
| rs4258439 | 0.94[JPT][hapmap] |
| rs7299704 | 0.94[JPT][hapmap] |
| rs7302354 | 0.94[JPT][hapmap] |
| rs7303677 | 0.94[JPT][hapmap] |
| rs7484942 | 0.94[JPT][hapmap] |
| rs765260 | 0.94[JPT][hapmap] |
| rs7962390 | 0.94[JPT][hapmap] |
| rs7962569 | 0.87[JPT][hapmap] |
| rs8181670 | 0.94[JPT][hapmap] |
| rs886589 | 0.94[JPT][hapmap] |
| rs954326 | 1.00[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.90[ASN][1000 genomes] |
| rs9651981 | 1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap] |
| rs9669263 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9804751 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Distal transcriptional regulation |
| COL2A1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014