SNP Report

Basic Infomation

Name	rs3742075 dbSNP
Location	chr:12,48457339
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 64)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10492081	0.81[CHB][hapmap]
rs1049392	0.89[CHB][hapmap];0.93[JPT][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10747529	0.90[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs10875733	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10875739	0.90[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs10875752	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes]
rs10875754	0.94[JPT][hapmap]
rs10875761	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs10875766	0.94[JPT][hapmap]
rs11168350	0.87[JPT][hapmap]
rs11168353	0.93[JPT][hapmap]
rs11168354	0.94[JPT][hapmap]
rs11168358	0.94[JPT][hapmap]
rs11168361	0.83[ASN][1000 genomes]
rs11168363	0.89[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs11168364	0.89[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs11168373	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11168378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11168404	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11168412	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11168417	0.89[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes]
rs11168419	0.89[EUR][1000 genomes]
rs11168424	0.89[CHB][hapmap];0.93[JPT][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11168434	0.89[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs11168435	0.88[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes]
rs11168438	1.00[JPT][hapmap]
rs11168445	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs11168448	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs11168453	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs11168454	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs11834818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12228924	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12422355	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12423250	0.86[JPT][hapmap]
rs12425679	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12426981	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122567	0.93[JPT][hapmap]
rs1859443	0.87[JPT][hapmap]
rs1978161	0.92[ASN][1000 genomes]
rs2056448	0.81[ASN][1000 genomes]
rs2107640	0.84[ASN][1000 genomes]
rs2286020	0.89[CHB][hapmap];0.93[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2408954	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs3825403	0.90[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs4258439	0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4760678	0.86[ASN][1000 genomes]
rs56129148	0.81[ASN][1000 genomes]
rs57430775	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58540891	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58556309	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7138917	0.93[ASN][1000 genomes]
rs7299704	0.90[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs7302354	0.89[CHB][hapmap];0.94[JPT][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7303677	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73104071	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7484942	0.93[JPT][hapmap]
rs765260	0.81[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs7962390	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs7962569	0.86[JPT][hapmap]
rs8181670	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs886589	0.81[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs954326	0.86[JPT][hapmap]
rs9651981	0.86[JPT][hapmap]
rs9804751	0.86[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
SENP1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)