SNP Report
Basic Infomation
| Name | rs7138917 dbSNP |
|---|---|
| Location | chr:12,48455255 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10747529 | 0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10875733 | 0.85[ASN][1000 genomes] |
| rs10875739 | 0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10875741 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10875744 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10875754 | 0.83[CEU][hapmap] |
| rs11168373 | 0.85[ASN][1000 genomes] |
| rs11168378 | 0.90[ASN][1000 genomes] |
| rs11168404 | 0.82[ASN][1000 genomes] |
| rs11832455 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11834818 | 0.93[ASN][1000 genomes] |
| rs12422355 | 0.91[ASN][1000 genomes] |
| rs12426981 | 0.93[ASN][1000 genomes] |
| rs1978161 | 0.89[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2107640 | 0.85[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2158515 | 0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3742075 | 0.93[ASN][1000 genomes] |
| rs3825403 | 0.96[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4258439 | 0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4760678 | 0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs56129148 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7299704 | 0.96[CEU][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7303677 | 0.85[ASN][1000 genomes] |
| rs7304428 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs765260 | 0.86[ASN][1000 genomes] |
| rs886589 | 0.86[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000258203 | Distal transcriptional regulation |
| ENSG00000257985 | Distal transcriptional regulation |
| SENP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014