SNP Report
Basic Infomation
| Name | rs7304428 dbSNP |
|---|---|
| Location | chr:12,48494275 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1049392 | 0.91[ASN][1000 genomes] |
| rs10747529 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10875739 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10875741 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10875744 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10875754 | 0.80[ASN][1000 genomes] |
| rs11168404 | 0.89[ASN][1000 genomes] |
| rs11168412 | 0.91[ASN][1000 genomes] |
| rs11168417 | 0.87[ASN][1000 genomes] |
| rs11168419 | 0.87[ASN][1000 genomes] |
| rs11168424 | 0.89[ASN][1000 genomes] |
| rs11832455 | 0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12228924 | 0.91[ASN][1000 genomes] |
| rs12425679 | 0.87[ASN][1000 genomes] |
| rs1978161 | 0.84[ASN][1000 genomes] |
| rs2107640 | 0.92[ASN][1000 genomes] |
| rs2158515 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2286020 | 0.87[ASN][1000 genomes] |
| rs3825403 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4258439 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4760678 | 0.82[ASN][1000 genomes] |
| rs56129148 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs57430775 | 0.87[ASN][1000 genomes] |
| rs58540891 | 0.91[ASN][1000 genomes] |
| rs58556309 | 0.87[ASN][1000 genomes] |
| rs7138917 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7299704 | 0.86[EUR][1000 genomes] |
| rs7302354 | 0.91[ASN][1000 genomes] |
| rs7303677 | 0.86[ASN][1000 genomes] |
| rs73104071 | 0.91[ASN][1000 genomes] |
| rs886589 | 0.80[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SENP1 | Proximal transcriptional regulation |
| PFKM | Proximal transcriptional regulation |
| PFKM | Distal transcriptional regulation |
| SENP1 | Distal transcriptional regulation |
| ASB8 | Distal transcriptional regulation |
| SENP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014