SNP Report
Basic Infomation
| Name | rs11832455 dbSNP |
|---|---|
| Location | chr:12,48488372 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1049392 | 0.83[ASN][1000 genomes] |
| rs10747529 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10875739 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10875741 | 0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10875744 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11168404 | 0.89[ASN][1000 genomes] |
| rs11168412 | 0.83[ASN][1000 genomes] |
| rs11168424 | 0.81[ASN][1000 genomes] |
| rs12228924 | 0.83[ASN][1000 genomes] |
| rs1978161 | 0.84[ASN][1000 genomes] |
| rs2107640 | 0.92[ASN][1000 genomes] |
| rs2158515 | 0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3825403 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4258439 | 0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs56129148 | 0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs58540891 | 0.83[ASN][1000 genomes] |
| rs7138917 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7299704 | 0.83[EUR][1000 genomes] |
| rs7302354 | 0.83[ASN][1000 genomes] |
| rs7303677 | 0.87[ASN][1000 genomes] |
| rs7304428 | 0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73104071 | 0.83[ASN][1000 genomes] |
| rs886589 | 0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SENP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014