SNP Report

Basic Infomation

Name	rs2158515 dbSNP
Location	chr:12,48507668
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 30)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1049392	0.93[ASN][1000 genomes]
rs10747529	0.96[CEU][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10875739	0.96[CEU][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10875741	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10875744	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10875754	0.89[CEU][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11168404	0.86[ASN][1000 genomes]
rs11168412	0.93[ASN][1000 genomes]
rs11168417	0.90[ASN][1000 genomes]
rs11168419	0.90[ASN][1000 genomes]
rs11168424	0.91[ASN][1000 genomes]
rs11832455	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12228924	0.93[ASN][1000 genomes]
rs12425679	0.90[ASN][1000 genomes]
rs1978161	0.82[ASN][1000 genomes]
rs2107640	0.90[ASN][1000 genomes]
rs2286020	0.90[ASN][1000 genomes]
rs3825403	0.96[CEU][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4258439	0.96[CEU][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56129148	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57430775	0.90[ASN][1000 genomes]
rs58540891	0.93[ASN][1000 genomes]
rs58556309	0.90[ASN][1000 genomes]
rs7138917	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7299704	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs7302354	0.93[ASN][1000 genomes]
rs7303677	0.84[ASN][1000 genomes]
rs7304428	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73104071	0.93[ASN][1000 genomes]
rs886589	0.90[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PFKM	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)