SNP Report
Basic Infomation
| Name | rs4760678 dbSNP |
|---|---|
| Location | chr:12,48461581 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10747529 | 0.84[ASN][1000 genomes] |
| rs10875739 | 0.84[ASN][1000 genomes] |
| rs10875741 | 0.82[ASN][1000 genomes] |
| rs11168378 | 0.83[ASN][1000 genomes] |
| rs11834818 | 0.86[ASN][1000 genomes] |
| rs12422355 | 0.84[ASN][1000 genomes] |
| rs12426981 | 0.86[ASN][1000 genomes] |
| rs1978161 | 0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2107640 | 0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3742075 | 0.86[ASN][1000 genomes] |
| rs3825403 | 0.92[ASN][1000 genomes] |
| rs4258439 | 0.92[ASN][1000 genomes] |
| rs56129148 | 0.81[ASN][1000 genomes] |
| rs7138917 | 0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7299704 | 0.84[ASN][1000 genomes] |
| rs7304428 | 0.82[ASN][1000 genomes] |
| rs765260 | 0.88[EUR][1000 genomes] |
| rs886589 | 0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SENP1 | Proximal transcriptional regulation |
| ASB8 | Distal transcriptional regulation |
| SENP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014