SNP Report

Basic Infomation

Name	rs11168378 dbSNP
Location	chr:12,48452081
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 37)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1049392	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10747529	0.83[ASN][1000 genomes]
rs10875733	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10875739	0.83[ASN][1000 genomes]
rs10875752	0.82[EUR][1000 genomes]
rs11168363	0.81[ASN][1000 genomes]
rs11168364	0.81[ASN][1000 genomes]
rs11168373	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11168404	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11168412	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11168417	0.88[EUR][1000 genomes]
rs11168419	0.88[EUR][1000 genomes]
rs11168424	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11168434	0.83[EUR][1000 genomes]
rs11168435	0.83[EUR][1000 genomes]
rs11834818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12228924	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12422355	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12425679	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12426981	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1978161	0.89[ASN][1000 genomes]
rs2107640	0.82[ASN][1000 genomes]
rs2286020	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3742075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3825403	0.90[ASN][1000 genomes]
rs4258439	0.90[ASN][1000 genomes]
rs4760678	0.83[ASN][1000 genomes]
rs56129148	0.80[ASN][1000 genomes]
rs57430775	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58540891	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58556309	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7138917	0.90[ASN][1000 genomes]
rs7299704	0.81[ASN][1000 genomes]
rs7302354	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7303677	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73104071	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs886589	0.82[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000240399	Proximal transcriptional regulation
SENP1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)