SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 10)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1049392	0.86[YRI][hapmap]
rs10875733	0.81[ASW][hapmap];0.81[CHB][hapmap];0.86[YRI][hapmap]
rs11168373	0.81[CHB][hapmap]
rs11168404	0.81[ASW][hapmap];0.81[CHB][hapmap];0.85[YRI][hapmap]
rs11168424	0.82[YRI][hapmap]
rs12422355	0.81[CHB][hapmap];0.86[YRI][hapmap]
rs2286020	0.86[YRI][hapmap]
rs3742075	0.81[CHB][hapmap]
rs7302354	0.86[YRI][hapmap]
rs7303677	0.81[ASW][hapmap];0.81[CHB][hapmap];0.86[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000222635	Proximal transcriptional regulation
ENSG00000226138	Proximal transcriptional regulation
TMEM106C	Distal transcriptional regulation
SENP1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 3)