SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 10)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10450783	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11168358	0.95[CEU][hapmap];0.98[EUR][1000 genomes]
rs11168360	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1635527	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs17122567	0.95[CEU][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs1793958	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs2056448	0.92[EUR][1000 genomes]
rs2408954	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs7134203	0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.92[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7135261	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
TMEM106C	Distal transcriptional regulation
ENSG00000257955	Distal transcriptional regulation
ASB8	Distal transcriptional regulation
HDAC7	Distal transcriptional regulation
COL2A1	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
TMEM106C	SCAN
DDN	SCAN