SNP Report
Basic Infomation
| Name | rs10875759 dbSNP |
|---|---|
| Location | chr:12,48572032 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 48)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1049392 | 0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10875752 | 0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10875754 | 0.91[ASN][1000 genomes] |
| rs10875757 | 0.96[ASN][1000 genomes] |
| rs10875761 | 0.85[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10875765 | 0.93[ASN][1000 genomes] |
| rs10875766 | 0.88[ASN][1000 genomes] |
| rs11168373 | 1.00[CEU][hapmap] |
| rs11168412 | 0.82[ASN][1000 genomes] |
| rs11168417 | 0.85[CHB][hapmap] |
| rs11168424 | 0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11168434 | 0.85[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11168435 | 0.85[CHB][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11168438 | 0.85[CHB][hapmap];0.87[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11168439 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11168442 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11168443 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11168444 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11168445 | 0.88[CEU][hapmap];0.85[CHB][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11168446 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11168447 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11168448 | 0.85[CHB][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11168453 | 0.85[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11168454 | 0.85[CHB][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12228924 | 0.82[ASN][1000 genomes] |
| rs12425679 | 0.88[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2171643 | 0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2286020 | 0.85[CHB][hapmap];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs56097189 | 0.96[ASN][1000 genomes] |
| rs57430775 | 0.86[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs58540891 | 0.88[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs58556309 | 0.88[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs59537300 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6580658 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs66507954 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7132898 | 0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7133274 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7136243 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7136782 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7136788 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7302354 | 0.85[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs73104071 | 0.88[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73105950 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73304926 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7484942 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7962390 | 0.85[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7962569 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs8181670 | 0.85[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000269514 | Distal transcriptional regulation |
| ASB8 | Distal transcriptional regulation |
| C12orf68 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014