SNP Report

Basic Infomation

Name	rs10877837 dbSNP
Location	chr:12,40352614
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 57)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506145	1.00[JPT][hapmap]
rs1086490	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10877823	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs10877832	0.89[YRI][hapmap]
rs11174315	0.87[YRI][hapmap]
rs11174338	0.89[YRI][hapmap]
rs11174370	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs11174427	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11174532	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11174533	0.93[EUR][1000 genomes]
rs11174536	0.80[EUR][1000 genomes]
rs11514248	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11559994	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs11564133	1.00[JPT][hapmap]
rs11564139	1.00[JPT][hapmap]
rs11564160	1.00[JPT][hapmap]
rs11564221	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11564223	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11564282	0.83[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs11564285	0.89[YRI][hapmap]
rs12230558	0.89[YRI][hapmap]
rs12312535	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12371119	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12810368	1.00[JPT][hapmap]
rs12827948	1.00[JPT][hapmap]
rs1482282	1.00[JPT][hapmap]
rs17442304	1.00[JPT][hapmap]
rs17442469	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17442756	1.00[JPT][hapmap]
rs17483628	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17559478	1.00[JPT][hapmap]
rs2046929	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2404346	0.82[ASN][1000 genomes]
rs2404574	1.00[JPT][hapmap]
rs28370600	0.89[YRI][hapmap]
rs28370607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28370611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28370644	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs28370654	0.82[ASN][1000 genomes]
rs28370656	1.00[JPT][hapmap]
rs28370659	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs28370681	0.82[ASN][1000 genomes]
rs28370692	1.00[YRI][hapmap]
rs28370728	0.89[YRI][hapmap]
rs28740188	0.82[ASN][1000 genomes]
rs28740190	1.00[YRI][hapmap]
rs4399379	1.00[JPT][hapmap]
rs55707305	0.82[ASN][1000 genomes]
rs7297783	0.89[YRI][hapmap]
rs7306718	1.00[JPT][hapmap]
rs7316296	0.89[YRI][hapmap]
rs73280629	0.86[EUR][1000 genomes]
rs7484475	1.00[JPT][hapmap]
rs7960023	0.87[AFR][1000 genomes]
rs7969495	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7974972	1.00[JPT][hapmap]
rs992851	0.83[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)