SNP Report

Basic Infomation

Name	rs11559994 dbSNP
Location	chr:12,40336494
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 33)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10877742	0.81[JPT][hapmap]
rs10877767	0.81[JPT][hapmap]
rs10877823	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877832	0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs10877836	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10877837	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs10877840	0.80[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11174281	0.81[JPT][hapmap]
rs11174315	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs11174338	0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs11174351	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11174374	0.87[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11564285	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs12230558	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs2132747	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs28370600	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs28370692	0.88[YRI][hapmap]
rs28740190	1.00[YRI][hapmap]
rs61931461	0.94[ASN][1000 genomes]
rs7136390	0.92[ASN][1000 genomes]
rs7297783	0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs7305863	0.80[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7312341	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7316296	0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs7959014	0.81[JPT][hapmap]
rs7960023	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7966222	0.85[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs7970063	0.81[JPT][hapmap]
rs7973509	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7974169	0.80[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7976837	0.85[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs7977137	0.81[JPT][hapmap]
rs7980177	0.80[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)