SNP Report
Basic Infomation
| Name | rs7970063 dbSNP |
|---|---|
| Location | chr:12,40314046 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10877742 | 0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap] |
| rs10877767 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10877823 | 0.81[JPT][hapmap] |
| rs10877832 | 0.81[JPT][hapmap] |
| rs10877836 | 0.81[JPT][hapmap] |
| rs10877840 | 0.81[JPT][hapmap] |
| rs11173669 | 0.81[CHB][hapmap] |
| rs11173704 | 0.81[CHB][hapmap] |
| rs11173979 | 0.81[CHB][hapmap] |
| rs11174281 | 0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11174315 | 0.81[JPT][hapmap] |
| rs11174338 | 0.81[JPT][hapmap] |
| rs11174351 | 0.81[JPT][hapmap] |
| rs11174374 | 0.81[JPT][hapmap] |
| rs11559994 | 0.81[JPT][hapmap] |
| rs11564285 | 0.81[JPT][hapmap] |
| rs12230558 | 0.81[JPT][hapmap] |
| rs28370600 | 0.81[JPT][hapmap] |
| rs7297783 | 0.81[JPT][hapmap] |
| rs7305863 | 0.81[JPT][hapmap] |
| rs7312341 | 0.81[JPT][hapmap] |
| rs7316296 | 0.81[JPT][hapmap] |
| rs7959014 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7973509 | 0.81[JPT][hapmap] |
| rs7974169 | 0.81[JPT][hapmap] |
| rs7977137 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014