SNP Report
Name | rs10877840   dbSNP |
---|---|
Location | chr:12,40352996 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10877742 | 0.81[JPT][hapmap] |
rs10877767 | 0.81[JPT][hapmap] |
rs10877823 | 1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs10877832 | 0.85[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs10877836 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs11174281 | 0.81[JPT][hapmap] |
rs11174315 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs11174338 | 0.85[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs11174351 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs11174374 | 0.85[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs11559994 | 0.80[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs11564120 | 1.00[LWK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
rs11564285 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs12230558 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs2132747 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28370599 | 0.88[AFR][1000 genomes] |
rs28370600 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs35985096 | 0.88[AFR][1000 genomes] |
rs61931461 | 0.99[ASN][1000 genomes] |
rs7136390 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7138078 | 1.00[YRI][hapmap] |
rs7297783 | 0.85[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs7305863 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7312341 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7316296 | 0.85[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs7959014 | 0.81[JPT][hapmap] |
rs7960023 | 0.90[ASN][1000 genomes] |
rs7966222 | 0.83[JPT][hapmap];0.80[ASN][1000 genomes] |
rs7970063 | 0.81[JPT][hapmap] |
rs7973509 | 0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7974169 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7976837 | 0.83[JPT][hapmap];0.80[ASN][1000 genomes] |
rs7977137 | 0.81[JPT][hapmap] |
Symbol | Regulation type |
---|---|
SLC2A13 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
GLIS3 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014