SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 27)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10877823	0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs10877832	0.83[JPT][hapmap]
rs10877836	0.83[JPT][hapmap]
rs10877840	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs10877867	1.00[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs11174315	0.83[JPT][hapmap]
rs11174338	0.83[JPT][hapmap]
rs11174351	0.83[JPT][hapmap]
rs11174374	0.83[JPT][hapmap]
rs11559994	0.85[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs11564285	0.83[JPT][hapmap]
rs12230558	0.83[JPT][hapmap]
rs12810368	0.86[LWK][hapmap]
rs12827948	0.86[LWK][hapmap]
rs1319734	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs2132747	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs28370600	0.83[JPT][hapmap]
rs7136390	0.80[ASN][1000 genomes]
rs7297783	0.83[JPT][hapmap]
rs7305863	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs7312341	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs7316296	0.83[JPT][hapmap]
rs7960023	0.83[ASN][1000 genomes]
rs7966222	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7973509	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs7974169	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs7980177	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
LRRK2	SCAN
MID1IP1	SCAN