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rVarBase
SNP Report
Basic Infomation
Name
rs10877867  
dbSNP
Location
chr:12,40362276
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11174533
0.83[ASN][1000 genomes]
rs11174536
0.83[ASN][1000 genomes]
rs11564221
0.88[CHB][hapmap];0.94[ASN][1000 genomes]
rs12810368
1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12827948
1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7311756
0.83[ASN][1000 genomes]
rs73280629
0.84[ASN][1000 genomes]
rs7966222
0.81[GIH][hapmap]
rs7976837
1.00[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rSNP related genes
Symbol
Regulation type
LRRK2
Distal transcriptional regulation
SLC2A13
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
LRRK2
SCAN
CYTSB
SCAN
LEPR
SCAN