SNP Report
Basic Infomation
| Name | rs12810368 dbSNP |
|---|---|
| Location | chr:12,40367171 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 45)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506145 | 1.00[JPT][hapmap] |
| rs1086490 | 1.00[JPT][hapmap] |
| rs10877837 | 1.00[JPT][hapmap] |
| rs10877867 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11174370 | 1.00[JPT][hapmap] |
| rs11564133 | 1.00[JPT][hapmap] |
| rs11564139 | 1.00[JPT][hapmap] |
| rs11564160 | 1.00[JPT][hapmap] |
| rs11564194 | 1.00[JPT][hapmap] |
| rs11564221 | 0.88[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs11564223 | 1.00[JPT][hapmap] |
| rs11564282 | 1.00[JPT][hapmap] |
| rs12312535 | 1.00[JPT][hapmap] |
| rs12371119 | 1.00[JPT][hapmap] |
| rs12827948 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1319734 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs1482282 | 1.00[JPT][hapmap] |
| rs17442108 | 1.00[JPT][hapmap] |
| rs17442304 | 1.00[JPT][hapmap] |
| rs17442469 | 1.00[JPT][hapmap] |
| rs17442749 | 1.00[JPT][hapmap] |
| rs17442756 | 1.00[JPT][hapmap] |
| rs17442853 | 1.00[JPT][hapmap] |
| rs17461082 | 1.00[JPT][hapmap] |
| rs17483628 | 1.00[JPT][hapmap] |
| rs17559478 | 1.00[JPT][hapmap] |
| rs2046929 | 1.00[JPT][hapmap] |
| rs2404574 | 1.00[JPT][hapmap] |
| rs28370607 | 1.00[JPT][hapmap] |
| rs28370644 | 1.00[JPT][hapmap] |
| rs28370654 | 1.00[JPT][hapmap] |
| rs28370656 | 1.00[JPT][hapmap] |
| rs28370659 | 1.00[JPT][hapmap] |
| rs28370681 | 1.00[JPT][hapmap] |
| rs28370805 | 1.00[JPT][hapmap] |
| rs4399379 | 1.00[JPT][hapmap] |
| rs7306718 | 1.00[JPT][hapmap] |
| rs7311756 | 0.85[ASN][1000 genomes] |
| rs73280629 | 0.95[ASN][1000 genomes] |
| rs7484475 | 1.00[JPT][hapmap] |
| rs7966222 | 0.81[GIH][hapmap] |
| rs7969495 | 1.00[JPT][hapmap] |
| rs7974972 | 1.00[JPT][hapmap] |
| rs7976837 | 0.86[LWK][hapmap] |
| rs992851 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Distal transcriptional regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014